Method List

Classes Methods Files

Search:

#& HTS::Bam::Flag
#<< HTS::Bam
#<< HTS::Bam::Flag
#<< HTS::Bam::Header
#== HTS::Bam::Cigar
#>> HTS::Bam::Flag
#[] HTS::Bam::Aux
#[] HTS::Bcf::Info
#[] HTS::Bcf::Format
#[] HTS::Bam::Mpileup::DepthView
#[] HTS::Bam::BaseMod
#[]= HTS::Bam::Aux
#[]= HTS::Bcf::Info
#^ HTS::Bam::Flag
#add_contig HTS::Bcf::Header
#add_filter HTS::Bcf::Header
#add_format HTS::Bcf::Header
#add_info HTS::Bcf::Header
#add_key HTS::Bcf::HeaderRecord
#add_key HTS::Native::BcfHeaderRecordHandle
#add_lines NativeSamHeader
#add_meta HTS::Bcf::Header
#add_pg HTS::Bam::Header
#add_rg HTS::Bam::Header
#add_sample HTS::Bcf::Header
#add_sample BcfHeader
#add_sq HTS::Bam::Header
#alignments HTS::Bam::Pileup::PileupColumn
#allele_count HTS::Bcf::Record
#alleles HTS::Bcf::Record
#alleles HTS::Native::BcfRecordHandle
#alleles= HTS::Bcf::Record
#alt HTS::Bcf::Record
#append HTS::Bam::Header
#append HTS::Bcf::Header
#append BcfHeader
#array HTS::Bam::Cigar
#at HTS::Native::BaseModHandle
#at_pos HTS::Bam::BaseMod
#aux HTS::Bam
#aux HTS::Bam::Record
#aux_append HTS::Native::BamRecordHandle
#aux_delete HTS::Native::BamRecordHandle
#aux_entries HTS::Native::BamRecordHandle
#aux_get HTS::Native::BamRecordHandle
#aux_key? HTS::Native::BamRecordHandle
#aux_update_array HTS::Native::BamRecordHandle
#aux_update_float HTS::Native::BamRecordHandle
#aux_update_int HTS::Native::BamRecordHandle
#aux_update_string HTS::Native::BamRecordHandle
bam_flag_string HTS::Native
#base HTS::Bam::Record
#base_code HTS::Bam::Pileup::BorrowedEntryView
#base_code HTS::Native::BamRecordHandle
#base_mod HTS::Bam::Record
#base_qual HTS::Bam::Record
#bin HTS::Bam::Record
#bin= HTS::Bam::Record
build NativeTabix
build NativeFaidx
build_index HTS::Bam
#build_index HTS::Bam
build_index HTS::Bcf
#build_index HTS::Bcf
build_index HTS::Faidx
#build_index HTS::Faidx
#build_index HTS::Tabix
build_index HTS::Native::BcfFileHandle
build_index HTS::Native::BamFileHandle
#canonical HTS::Bam::BaseMod::Modification
#canonical_base HTS::Bam::BaseMod::Modification
#chrom HTS::Bam
#chrom HTS::Bam::Record
#chrom HTS::Bcf::Record
#chrom= HTS::Bam::Record
#cigar HTS::Bam
#cigar HTS::Bam::Record
#cigar= HTS::Bam::Record
#cigar= HTS::Native::BamRecordHandle
cigar_parse HTS::Native
cigar_qlen HTS::Native
cigar_rlen HTS::Native
#cigar_values HTS::Native::BamRecordHandle
#clear_id HTS::Bcf::Record
#close HTS::Bam
#close HTS::Bcf
#close HTS::Faidx
#close HTS::Tabix
#close HTS::Bam::Pileup
#close HTS::Bam::Mpileup
#close HTS::Bam::BaseMod
#close NativeTabix
#close NativeFaidx
#close HTS::Native::BcfFileHandle
#close HTS::Native::BcfIteratorHandle
#close HTS::Native::BamFileHandle
#close HTS::Native::BamIteratorHandle
#close HTS::Native::BaseModHandle
#close HTS::Native::PileupHandle
#close HTS::Native::MpileupHandle
#closed? HTS::Bam
#closed? HTS::Bcf
#closed? HTS::Faidx
#closed? HTS::Tabix
#closed? NativeTabix
#closed? NativeFaidx
#closed? HTS::Native::BcfFileHandle
#closed? HTS::Native::BamFileHandle
#code HTS::Bam::BaseMod::Modification
#collect_records HTS::Bam
#collect_records HTS::Bcf
#core_get HTS::Native::BcfRecordHandle
#core_get HTS::Native::BamRecordHandle
#core_set HTS::Native::BcfRecordHandle
#core_set HTS::Native::BamRecordHandle
#count_lines HTS::Bam::Header
#count_lines NativeSamHeader
create NativeSamHeader
create BcfHeader
create HTS::Native::BcfRecordHandle
create HTS::Native::BamRecordHandle
#del? HTS::Bam::Pileup::PileupRecord
#del? HTS::Bam::Pileup::BorrowedEntryView
#delete HTS::Bam::Aux
#delete HTS::Bcf::Info
#delete HTS::Bcf::Format
#delete HTS::Bcf::Header
#delete_line HTS::Bam::Header
#delete_tag HTS::Bam::Header
#depth HTS::Bam::Pileup::PileupColumn
#depth HTS::Bam::Pileup::BorrowedColumnView
#duplicate BcfHeader
#duplicate HTS::Native::BcfHeaderRecordHandle
#duplicate HTS::Native::BcfRecordHandle
#duplicate NativeSamHeader
#duplicate HTS::Native::BamRecordHandle
#duplicate? HTS::Bam::Flag
#each HTS::Bam
#each HTS::Bcf
#each HTS::Bam::Aux
#each HTS::Bam::Cigar
#each HTS::Bam::Pileup::BorrowedColumnView
#each HTS::Bam::Pileup
#each HTS::Bcf::Format::NumericVectorView
#each HTS::Bam::Mpileup::DepthView
#each HTS::Bam::Mpileup::ColumnsView
#each HTS::Bam::Mpileup
#each_allele HTS::Bcf::Format::GenotypeView
#each_allele_raw HTS::Bcf::Record
#each_array HTS::Bam::Aux
#each_aux HTS::Bam
#each_base HTS::Bam::Record
#each_base_code HTS::Bam::Record
#each_base_counts HTS::Bam::Pileup
#each_base_counts HTS::Bam::Mpileup
#each_base_mod_raw HTS::Bam::Record
#each_chrom HTS::Bam
#each_cigar HTS::Bam
#each_cigar_raw HTS::Bam::Record
#each_column_raw HTS::Bam::Mpileup
#each_depth HTS::Bam::Pileup
#each_depth HTS::Bam::Mpileup
#each_entry_raw HTS::Bam::Pileup
#each_entry_raw HTS::Bam::Mpileup
#each_f32_vector HTS::Bcf::Format
#each_fields HTS::Tabix
#each_filter_id HTS::Bcf::Record
#each_flag HTS::Bam
#each_format HTS::Bcf
#each_genotype HTS::Bcf::Format
#each_i32 HTS::Bcf::Format
#each_i32_vector HTS::Bcf::Format
#each_info HTS::Bcf
#each_insert_size HTS::Bam
#each_line HTS::Tabix
#each_mapq HTS::Bam
#each_mate_chrom HTS::Bam
#each_mate_pos HTS::Bam
#each_pos HTS::Bam
#each_position HTS::Bam::BaseMod
#each_qname HTS::Bam
#each_qual HTS::Bam
#each_qual HTS::Bam::Record
#each_raw HTS::Bam::BaseMod
#each_raw HTS::Native::BaseModHandle
#each_selected_fields HTS::Tabix
#each_seq HTS::Bam
#each_tag_id HTS::Bam::Aux
#each_value HTS::Bam::Aux
#each_view HTS::Bam::Pileup
#each_view HTS::Bam::Mpileup
#each_with_type HTS::Bam::Aux
#edit HTS::Bcf::Header
#endpos HTS::Bam::Record
#endpos HTS::Bcf::Record
#endpos HTS::Native::BamRecordHandle
#ensure_parsed! HTS::Bam::BaseMod
#eql? HTS::Bam::Cigar
#fetch_qual HTS::Faidx
#fetch_qual NativeFaidx
#fetch_seq HTS::Faidx
#fetch_seq NativeFaidx
#fields HTS::Bcf::Info
#fields HTS::Bcf::Format
#file_format HTS::Bam
#file_format HTS::Bcf
#file_format HTS::Tabix
#file_format NativeTabix
#file_format HTS::Native::BcfFileHandle
#file_format HTS::Native::BamFileHandle
#file_format_version HTS::Bam
#file_format_version HTS::Bcf
#file_format_version HTS::Tabix
#file_format_version NativeTabix
#file_format_version HTS::Native::BcfFileHandle
#file_format_version HTS::Native::BamFileHandle
#file_name HTS::Bam
#file_name HTS::Bcf
#file_name HTS::Faidx
#file_name HTS::Tabix
#filter HTS::Bcf::Record
#filter_id? HTS::Bcf::Record
#filter_ids HTS::Bcf::Record
#filter_ids HTS::Native::BcfRecordHandle
#filter_names HTS::Native::BcfRecordHandle
filter_records HTS::Bam
filter_records HTS::Bcf
#find_key HTS::Bcf::HeaderRecord
#find_key HTS::Native::BcfHeaderRecordHandle
#find_line HTS::Bam::Header
#find_line NativeSamHeader
#find_line_at HTS::Bam::Header
#find_line_at NativeSamHeader
#find_tag HTS::Bam::Header
#find_tag NativeSamHeader
#first HTS::Bam::Aux
#flag HTS::Bam
#flag HTS::Bam::Pileup::BorrowedEntryView
#flag HTS::Bam::Record
#flag= HTS::Bam::Record
#flag_value HTS::Bam::Record
#format HTS::Bcf
#format HTS::Faidx
#format HTS::Bcf::Record
#format HTS::Native::BamRecordHandle
#format_delete HTS::Native::BcfRecordHandle
#format_fields HTS::Native::BcfRecordHandle
#format_get HTS::Native::BcfRecordHandle
#format_record HTS::Native::BcfRecordHandle
#format_update HTS::Native::BcfRecordHandle
#format_update_float_words HTS::Native::BcfRecordHandle
#generation HTS::Bcf::Format::BufferState
#genotype_at HTS::Bcf::Format
#genotype_strings HTS::Bcf::Format
#genotype_update HTS::Native::BcfRecordHandle
#get HTS::Bam::Aux
#get HTS::Bcf::Info
#get HTS::Bcf::Format
#get_flag HTS::Bcf::Info
#get_flag HTS::Bcf::Format
#get_float HTS::Bam::Aux
#get_float HTS::Bcf::Info
#get_float HTS::Bcf::Format
#get_float_words HTS::Bcf::Format
#get_genotypes HTS::Bcf::Format
#get_hrec HTS::Bcf::Header
#get_hrec BcfHeader
#get_int HTS::Bam::Aux
#get_int HTS::Bcf::Info
#get_int HTS::Bcf::Format
#get_int64 HTS::Bcf::Info
#get_raw HTS::Bcf::Format
#get_string HTS::Bam::Aux
#get_string HTS::Bcf::Info
#get_string HTS::Bcf::Format
#get_tid HTS::Bam::Header
#get_tid HTS::Bcf::Header
#get_version HTS::Bcf::Header
gt_allele HTS::Bcf::Format
gt_missing? HTS::Bcf::Format
gt_phased HTS::Bcf::Format
gt_phased? HTS::Bcf::Format
gt_unphased HTS::Bcf::Format
gt_vector_end? HTS::Bcf::Format
#has_flag? HTS::Bam::Flag
#has_seq? HTS::Faidx
#has_seq? NativeFaidx
#head? HTS::Bam::Pileup::PileupRecord
#header HTS::Bam
#header HTS::Bcf
#header HTS::Bam::Record
#header HTS::Bcf::Record
htslib_version HTS::Native
#hydroxymethylated? HTS::Bam::BaseMod::Position
#id HTS::Bcf::Record
#id HTS::Native::BcfRecordHandle
#id2name HTS::Bcf::Header
#id2name BcfHeader
#id= HTS::Bcf::Record
#ids HTS::Bcf::Format
#indel HTS::Bam::Pileup::PileupRecord
#indel HTS::Bam::Pileup::BorrowedEntryView
#index_loaded? HTS::Bam
#index_loaded? HTS::Bcf
#index_loaded? HTS::Tabix
#index_loaded? NativeTabix
#index_loaded? HTS::Native::BcfFileHandle
#index_loaded? HTS::Native::BamFileHandle
#index_name HTS::Bam
#index_name HTS::Bcf
#index_name HTS::Tabix
#info HTS::Bcf
#info HTS::Bcf::Record
#info_fields HTS::Native::BcfRecordHandle
#info_get HTS::Native::BcfRecordHandle
#info_present? HTS::Native::BcfRecordHandle
#info_update HTS::Native::BcfRecordHandle
#initialize HTS::Bam
#initialize HTS::Bcf
#initialize HTS::Hts
#initialize HTS::Faidx
#initialize HTS::Tabix
#initialize HTS::Bam::Aux
#initialize HTS::Bam::Flag
#initialize HTS::Bcf::Info
#initialize HTS::Bam::Cigar
#initialize HTS::Bam::Header
#initialize HTS::Bam::Pileup::PileupRecord
#initialize HTS::Bam::Pileup::BorrowedColumnView
#initialize HTS::Bam::Pileup
#initialize HTS::Bam::Record
#initialize HTS::Bcf::Format::NumericVectorView
#initialize HTS::Bcf::Format
#initialize HTS::Bcf::Header
#initialize HTS::Bcf::Record
#initialize HTS::Bam::Mpileup::DepthView
#initialize HTS::Bam::Mpileup::ColumnsView
#initialize HTS::Bam::Mpileup
#initialize HTS::Bam::BaseMod::Modification
#initialize HTS::Bam::BaseMod::Position
#initialize HTS::Bam::BaseMod
#initialize HTS::Bam::HeaderRecord
#initialize HTS::Bcf::HeaderRecord
#insert_size HTS::Bam
#insert_size HTS::Bam::Record
#insert_size= HTS::Bam::Record
#inspect HTS::Bam::BaseMod::Modification
#inspect HTS::Bam::BaseMod::Position
#inspect HTS::Bam::BaseMod
#key? HTS::Bam::Aux
#key? HTS::Bcf::Info
#keys HTS::Bcf::Info
#len HTS::Bam::Record
#length HTS::Bcf::Info
#length HTS::Bcf::Format
#length HTS::Bam::Mpileup::DepthView
#length HTS::Bam::Mpileup::ColumnsView
#line_index HTS::Bam::Header
#line_index NativeSamHeader
#line_name HTS::Bam::Header
#line_name NativeSamHeader
#load_index HTS::Bam
#load_index HTS::Bcf
#load_index HTS::Tabix
#load_index NativeTabix
#load_index HTS::Native::BcfFileHandle
#load_index HTS::Native::BamFileHandle
#mapq HTS::Bam
#mapq HTS::Bam::Record
#mapq= HTS::Bam::Record
#mate_chrom HTS::Bam
#mate_chrom HTS::Bam::Record
#mate_chrom= HTS::Bam::Record
#mate_pos HTS::Bam
#mate_pos HTS::Bam::Record
#mate_pos= HTS::Bam::Record
#mate_reverse? HTS::Bam::Flag
#mate_strand HTS::Bam::Record
#mate_unmapped? HTS::Bam::Flag
#max_unpack= HTS::Native::BcfRecordHandle
#merge HTS::Bcf::Header
#merge BcfHeader
#methylated? HTS::Bam::BaseMod::Position
#mode HTS::Bam
#mode HTS::Bcf
#mode HTS::Tabix
#modification_types HTS::Bam::BaseMod
#modifications HTS::Bam::BaseMod::Position
#modified_base HTS::Bam::BaseMod::Modification
#mtid HTS::Bam::Record
#mtid= HTS::Bam::Record
#name2id HTS::Tabix
#name2id HTS::Bcf::Header
#name2id NativeTabix
#name2id BcfHeader
#name2tid NativeSamHeader
#names HTS::Faidx
#names NativeFaidx
#next HTS::Native::BcfIteratorHandle
#next HTS::Native::BamIteratorHandle
#next HTS::Native::PileupHandle
#next HTS::Native::MpileupHandle
#nsamples HTS::Bcf
#nsamples HTS::Bcf::Header
#nsamples BcfHeader
#nthreads HTS::Bam
#nthreads HTS::Bcf
#nthreads HTS::Tabix
open HTS::Bam
open HTS::Bcf
open HTS::Faidx
open HTS::Tabix
open HTS::Bam::Pileup
open HTS::Bam::Mpileup
open NativeFaidx
open NativeTabix
open HTS::Native::BcfFileHandle
open HTS::Native::BamFileHandle
open HTS::Native::BaseModHandle
open HTS::Native::PileupHandle
open HTS::Native::MpileupHandle
#paired? HTS::Bam::Flag
parse HTS::Bam::Cigar
parse HTS::Bam::Header
#parse HTS::Bam::BaseMod
parse NativeSamHeader
#parse HTS::Native::BaseModHandle
#parsed? HTS::Bam::BaseMod
#pileup HTS::Bam
#pos HTS::Bam
#pos HTS::Bam::Pileup::PileupColumn
#pos HTS::Bam::Pileup::BorrowedEntryView
#pos HTS::Bam::Pileup::BorrowedColumnView
#pos HTS::Bam::Record
#pos HTS::Bcf::Record
#pos HTS::Bam::Mpileup::ColumnsView
#pos= HTS::Bam::Record
#pos= HTS::Bcf::Record
#position HTS::Bam::BaseMod::Position
#probability HTS::Bam::BaseMod::Modification
#proper_pair? HTS::Bam::Flag
#qcfail? HTS::Bam::Flag
#qlen HTS::Bam::Cigar
#qlen HTS::Bam::Record
#qlen HTS::Native::BamRecordHandle
#qname HTS::Bam
#qname HTS::Bam::Record
#qname HTS::Native::BamRecordHandle
#qname= HTS::Bam::Record
#qname= HTS::Native::BamRecordHandle
#qual HTS::Bam
#qual HTS::Bam::Record
#qual HTS::Bcf::Record
#qual HTS::Bam::BaseMod::Modification
#qual= HTS::Bcf::Record
#qual_string HTS::Bam::Record
#qualities HTS::Native::BamRecordHandle
#quality HTS::Bam::Pileup::BorrowedEntryView
#quality_at HTS::Native::BamRecordHandle
#quality_string HTS::Native::BamRecordHandle
#query HTS::Bam
#query HTS::Bcf
#query HTS::Tabix
#query HTS::Native::BaseModHandle
#query_at HTS::Native::BaseModHandle
#query_interval NativeTabix
#query_interval HTS::Native::BcfFileHandle
#query_interval HTS::Native::BamFileHandle
#query_position HTS::Bam::Pileup::PileupRecord
#query_position HTS::Bam::Pileup::BorrowedEntryView
#query_region NativeTabix
#query_region HTS::Native::BcfFileHandle
#query_region HTS::Native::BamFileHandle
#query_type HTS::Bam::BaseMod
#query_type_at HTS::Bam::BaseMod
#query_with_mode HTS::Tabix
#read HTS::Native::BcfFileHandle
#read HTS::Native::BamFileHandle
#read1? HTS::Bam::Flag
#read2? HTS::Bam::Flag
#read_bcf HTS::Bcf::Header
#read_file BcfHeader
#read_header HTS::Native::BcfFileHandle
#read_header HTS::Native::BamFileHandle
#record HTS::Bam::Aux
#record HTS::Bam::Pileup::PileupRecord
#record HTS::Bam::BaseMod
#ref HTS::Bcf::Record
#refskip? HTS::Bam::Pileup::PileupRecord
#refskip? HTS::Bam::Pileup::BorrowedEntryView
#remove BcfHeader
#remove_contig HTS::Bcf::Header
#remove_filter HTS::Bcf::Header
#remove_format HTS::Bcf::Header
#remove_info HTS::Bcf::Header
#remove_line HTS::Bam::Header
#remove_line NativeSamHeader
#remove_line_at HTS::Bam::Header
#remove_line_at NativeSamHeader
#remove_rg HTS::Bam::Header
#remove_sq HTS::Bam::Header
#remove_tag NativeSamHeader
#replace HTS::Native::BamRecordHandle
#reset HTS::Bam::Pileup::BorrowedEntryView
#reset HTS::Bam::Pileup::BorrowedColumnView
#reset HTS::Bam::Pileup
#reset HTS::Bcf::Format::NumericVectorView
#reset HTS::Bcf::Format::GenotypeView
#reset HTS::Bam::Mpileup::DepthView
#reset HTS::Bam::Mpileup::ColumnsView
#reset HTS::Bam::Mpileup
#reset HTS::Native::PileupHandle
#reset HTS::Native::MpileupHandle
#reverse? HTS::Bam::Flag
#rewind HTS::Bam
#rewind HTS::Bcf
#rid HTS::Bcf::Record
#rid= HTS::Bcf::Record
#rlen HTS::Bam::Cigar
#rlen HTS::Bam::Record
#rlen HTS::Native::BamRecordHandle
#samples HTS::Bcf
#samples HTS::Bcf::Header
#samples BcfHeader
#schema BcfHeader
#schema_version HTS::Bcf::Header
#secondary? HTS::Bam::Flag
#seek HTS::Bam
#seek HTS::Bcf
#seek HTS::Native::BcfFileHandle
#seek HTS::Native::BamFileHandle
selected_fields HTS::Native
#seq HTS::Bam
#seq HTS::Bam::Record
#seq_len HTS::Faidx
#seq_len NativeFaidx
#seqnames HTS::Tabix
#seqnames HTS::Bcf::Header
#seqnames NativeTabix
#seqnames BcfHeader
#sequence HTS::Native::BamRecordHandle
#sequence_codes HTS::Native::BamRecordHandle
#set_alleles HTS::Native::BcfRecordHandle
#set_fai HTS::Native::BamFileHandle
#set_id HTS::Native::BcfRecordHandle
#set_threads HTS::Bam
#set_threads HTS::Bcf
#set_threads HTS::Tabix
#set_threads NativeTabix
#set_threads HTS::Native::BcfFileHandle
#set_threads HTS::Native::BamFileHandle
#set_value HTS::Bcf::HeaderRecord
#set_value HTS::Native::BcfHeaderRecordHandle
#set_version HTS::Bcf::Header
#set_version BcfHeader
#size HTS::Faidx
#size NativeFaidx
#strand HTS::Bam::Record
#strand HTS::Bam::BaseMod::Modification
#subset HTS::Bcf::Header
#subset BcfHeader
#subset HTS::Native::BcfRecordHandle
#subset? HTS::Bcf::Header
#subset_imap_pointer HTS::Bcf::Header
#subset_sample_count HTS::Bcf::Header
#subset_samples HTS::Bcf::Header
#supplementary? HTS::Bam::Flag
#sync HTS::Bcf::Header
#sync BcfHeader
tag_id HTS::Bam::Aux
#tail? HTS::Bam::Pileup::PileupRecord
#target_count HTS::Bam::Header
#target_count HTS::Bcf::Header
#target_count NativeSamHeader
#target_len HTS::Bam::Header
#target_length NativeSamHeader
#target_name HTS::Bam::Header
#target_name HTS::Bcf::Header
#target_name NativeSamHeader
#target_names HTS::Bam::Header
#target_names HTS::Bcf::Header
#targets HTS::Bam::Header
#tell HTS::Bam
#tell HTS::Bcf
#tell HTS::Native::BcfFileHandle
#tell HTS::Native::BamFileHandle
#tid HTS::Bam::Pileup::PileupColumn
#tid HTS::Bam::Pileup::BorrowedEntryView
#tid HTS::Bam::Pileup::BorrowedColumnView
#tid HTS::Bam::Record
#tid HTS::Bam::Mpileup::ColumnsView
#tid= HTS::Bam::Record
#to_a HTS::Bcf::Format::NumericVectorView
#to_a HTS::Bam::BaseMod
#to_h HTS::Bam::Aux
#to_h HTS::Bcf::Info
#to_h HTS::Bcf::Format
#to_h HTS::Bam::BaseMod::Modification
#to_h HTS::Bam::BaseMod::Position
#to_i HTS::Bam::Flag
#to_s HTS::Bam::Flag
#to_s HTS::Bam::Cigar
#to_s HTS::Bam::Header
#to_s HTS::Bam::Record
#to_s HTS::Bcf::Format::GenotypeView
#to_s HTS::Bcf::Header
#to_s HTS::Bcf::Record
#to_s HTS::Bam::BaseMod::Modification
#to_s HTS::Bam::BaseMod::Position
#to_s HTS::Bam::BaseMod
#to_s HTS::Bcf::HeaderRecord
#to_s BcfHeader
#to_s HTS::Native::BcfHeaderRecordHandle
#to_s NativeSamHeader
#types HTS::Native::BaseModHandle
#unmapped? HTS::Bam::Flag
#unpack HTS::Bcf
#update_array HTS::Bam::Aux
#update_char HTS::Bam::Aux
#update_double HTS::Bam::Aux
#update_flag HTS::Bcf::Info
#update_float HTS::Bam::Aux
#update_float HTS::Bcf::Info
#update_float HTS::Bcf::Format
#update_float_words HTS::Bcf::Format
#update_format HTS::Bcf::Header
#update_genotypes HTS::Bcf::Format
#update_hd HTS::Bam::Header
#update_hex HTS::Bam::Aux
#update_info HTS::Bcf::Header
#update_int HTS::Bam::Aux
#update_int HTS::Bcf::Info
#update_int HTS::Bcf::Format
#update_int16 HTS::Bam::Aux
#update_int32 HTS::Bam::Aux
#update_int64 HTS::Bcf::Info
#update_int8 HTS::Bam::Aux
#update_rg HTS::Bam::Header
#update_sq HTS::Bam::Header
#update_string HTS::Bam::Aux
#update_string HTS::Bcf::Info
#update_string HTS::Bcf::Format
#update_uint16 HTS::Bam::Aux
#update_uint32 HTS::Bam::Aux
#update_uint8 HTS::Bam::Aux
#value HTS::Bam::Flag
#version BcfHeader
#write HTS::Bam
#write HTS::Bcf
#write HTS::Bam::Header
#write HTS::Native::BcfFileHandle
#write HTS::Native::BamFileHandle
#write_header HTS::Bam
#write_header HTS::Bcf
#write_header HTS::Native::BcfFileHandle
#write_header HTS::Native::BamFileHandle
#| HTS::Bam::Flag
#~ HTS::Bam::Flag