Class List

Classes Methods Files

Search:

Top Level Namespace
HTSTop Level Namespace
- Bam < HtsHTS
  - Aux < ObjectHTS::Bam
  - BaseMod < ObjectHTS::Bam
    Modification < ObjectHTS::Bam::BaseMod
    NotParsedError < StandardErrorHTS::Bam::BaseMod
    Position < ObjectHTS::Bam::BaseMod
  - Cigar < ObjectHTS::Bam
  - Flag < ObjectHTS::Bam
  - Header < ObjectHTS::Bam
  - HeaderRecord < ObjectHTS::Bam
  - Mpileup < ObjectHTS::Bam
    ColumnsView < ObjectHTS::Bam::Mpileup
    DepthView < ObjectHTS::Bam::Mpileup
  - Pileup < ObjectHTS::Bam
    BorrowedColumnView < ObjectHTS::Bam::Pileup
    BorrowedEntryView < ObjectHTS::Bam::Pileup
    PileupColumn < StructHTS::Bam::Pileup
    PileupRecord < ObjectHTS::Bam::Pileup
  - Record < ObjectHTS::Bam
- Bcf < HtsHTS
  - Error < ErrorHTS::Bcf
  - FieldError < ErrorHTS::Bcf
  - Format < ObjectHTS::Bcf
    BufferState < StructHTS::Bcf::Format
    GenotypeView < ObjectHTS::Bcf::Format
    NumericVectorView < ObjectHTS::Bcf::Format
  - FormatDefinitionError < FormatErrorHTS::Bcf
  - FormatError < FieldErrorHTS::Bcf
  - FormatReadError < FormatErrorHTS::Bcf
  - FormatTypeError < FormatErrorHTS::Bcf
  - FormatUpdateError < FormatErrorHTS::Bcf
  - Header < ObjectHTS::Bcf
  - HeaderError < ErrorHTS::Bcf
  - HeaderRecord < ObjectHTS::Bcf
  - IndexError < ErrorHTS::Bcf
  - Info < ObjectHTS::Bcf
  - InfoError < FieldErrorHTS::Bcf
  - InfoReadError < InfoErrorHTS::Bcf
  - InfoTypeError < InfoErrorHTS::Bcf
  - InfoUpdateError < InfoErrorHTS::Bcf
  - InvalidBorrowedViewError < FormatErrorHTS::Bcf
  - MissingIndexError < IndexErrorHTS::Bcf
  - OpenError < ErrorHTS::Bcf
  - QueryError < ErrorHTS::Bcf
  - Record < ObjectHTS::Bcf
  - SubsetError < HeaderErrorHTS::Bcf
  - UnknownSampleError < SubsetErrorHTS::Bcf
  - UnsupportedFormatOperationError < FormatErrorHTS::Bcf
  - UnsupportedInfoOperationError < InfoErrorHTS::Bcf
- Error < StandardErrorHTS
- Faidx < ObjectHTS
- Hts < ObjectHTS
- NativeHTS
  - BamFileHandle < ObjectHTS::Native
  - BamIteratorHandle < ObjectHTS::Native
  - BamRecordHandle < ObjectHTS::Native
  - BaseModHandle < ObjectHTS::Native
  - BcfFileHandle < ObjectHTS::Native
  - BcfHeaderRecordHandle < ObjectHTS::Native
  - BcfIteratorHandle < ObjectHTS::Native
  - BcfRecordHandle < ObjectHTS::Native
  - MpileupHandle < ObjectHTS::Native
  - PileupHandle < ObjectHTS::Native
- Tabix < HtsHTS