Class: HTS::Bam::Pileup::BorrowedEntryView

Inherits:
Object
  • Object
show all
Defined in:
lib/hts/bam/pileup.rb

Instance Attribute Summary collapse

Instance Method Summary collapse

Instance Attribute Details

#pos ⇒ Object (readonly)

Returns the value of attribute pos.



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# File 'lib/hts/bam/pileup.rb', line 49

def pos
  @pos
end

#tid ⇒ Object (readonly)

Returns the value of attribute tid.



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# File 'lib/hts/bam/pileup.rb', line 49

def tid
  @tid
end

Instance Method Details

#base_code ⇒ Object 



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# File 'lib/hts/bam/pileup.rb', line 56

def base_code = @values[8]

#del? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/hts/bam/pileup.rb', line 53

def del? = @values[3]

#flag ⇒ Object 



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# File 'lib/hts/bam/pileup.rb', line 55

def flag = @values[7]

#indel ⇒ Object 



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# File 'lib/hts/bam/pileup.rb', line 52

def indel = @values[2]

#quality ⇒ Object 



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# File 'lib/hts/bam/pileup.rb', line 57

def quality = @values[9]

#query_position ⇒ Object 



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# File 'lib/hts/bam/pileup.rb', line 51

def query_position = @values[1]

#refskip? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/hts/bam/pileup.rb', line 54

def refskip? = @values[6]

#reset(values, tid, pos) ⇒ Object 



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# File 'lib/hts/bam/pileup.rb', line 43

def reset(values, tid, pos)
  @values = values
  @tid = tid
  @pos = pos
  self
end