Class: Rafflesia::HmmerSearchData

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/sequences/hmmer_search_data.rb

Constant Summary collapse

HASH_ATTRS = 
{
  backend: :backend,
  command: :command,
  db: :db,
  domain_hits: :domain_hits,
  domains: :domains,
  dry_run: :dry_run,
  hit_count: :hit_count,
  hits: :hits,
  manifest_id: :manifest_id,
  materialization: :materialization,
  normalized_output_object: :normalized_output_object,
  output_object: :output_object,
  output_path: :output_path,
  parameters: :parameters,
  program: :program,
  query: :query,
  raw_output_object: :raw_output_object,
  relation: :relation
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ HmmerSearchData

Returns a new instance of HmmerSearchData.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 49

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @backend = hash[:backend]
  @command = (hash[:command] || [])
  @db = hash[:db]
  @domain_hits = (hash[:domain_hits] || []).map { |item| item ? Rafflesia::HmmerDomainHit.new(item) : nil }
  @domains = hash[:domains]
  @dry_run = hash[:dry_run]
  @hit_count = hash[:hit_count]
  @hits = (hash[:hits] || []).map { |item| item ? Rafflesia::HmmerHit.new(item) : nil }
  @manifest_id = hash[:manifest_id]
  @materialization = hash[:materialization] ? Rafflesia::ObjectArtifactMaterializeData.new(hash[:materialization]) : nil
  @normalized_output_object = hash[:normalized_output_object] ? Rafflesia::ObjectRef.new(hash[:normalized_output_object]) : nil
  @output_object = hash[:output_object] ? Rafflesia::ObjectRef.new(hash[:output_object]) : nil
  @output_path = hash[:output_path]
  @parameters = hash[:parameters] || {}
  @program = hash[:program]
  @query = hash[:query]
  @raw_output_object = hash[:raw_output_object] ? Rafflesia::ObjectRef.new(hash[:raw_output_object]) : nil
  @relation = hash[:relation] ? Rafflesia::RelationArtifactData.new(hash[:relation]) : nil
end

Instance Attribute Details

#backend ⇒ Object

Returns the value of attribute backend.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def backend
  @backend
end

#command ⇒ Object

Returns the value of attribute command.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def command
  @command
end

#db ⇒ Object

Returns the value of attribute db.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def db
  @db
end

#domain_hits ⇒ Object

Returns the value of attribute domain_hits.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def domain_hits
  @domain_hits
end

#domains ⇒ Object

Returns the value of attribute domains.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def domains
  @domains
end

#dry_run ⇒ Object

Returns the value of attribute dry_run.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def dry_run
  @dry_run
end

#hit_count ⇒ Object

Returns the value of attribute hit_count.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def hit_count
  @hit_count
end

#hits ⇒ Object

Returns the value of attribute hits.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def hits
  @hits
end

#manifest_id ⇒ Object

Returns the value of attribute manifest_id.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def manifest_id
  @manifest_id
end

#materialization ⇒ Object

Returns the value of attribute materialization.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def materialization
  @materialization
end

#normalized_output_object ⇒ Object

Returns the value of attribute normalized_output_object.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def normalized_output_object
  @normalized_output_object
end

#output_object ⇒ Object

Returns the value of attribute output_object.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def output_object
  @output_object
end

#output_path ⇒ Object

Returns the value of attribute output_path.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def output_path
  @output_path
end

#parameters ⇒ Object

Returns the value of attribute parameters.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def parameters
  @parameters
end

#program ⇒ Object

Returns the value of attribute program.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def program
  @program
end

#query ⇒ Object

Returns the value of attribute query.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def query
  @query
end

#raw_output_object ⇒ Object

Returns the value of attribute raw_output_object.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def raw_output_object
  @raw_output_object
end

#relation ⇒ Object

Returns the value of attribute relation.



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# File 'lib/rafflesia/sequences/hmmer_search_data.rb', line 29

def relation
  @relation
end