Class: Rafflesia::HmmerHit

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/sequences/hmmer_hit.rb

Constant Summary collapse

HASH_ATTRS = 
{
  best_dom_bias: :best_dom_bias,
  best_dom_evalue: :best_dom_evalue,
  best_dom_score: :best_dom_score,
  description: :description,
  domain_number_estimation: :domain_number_estimation,
  full_bias: :full_bias,
  full_evalue: :full_evalue,
  full_score: :full_score,
  query_accession: :query_accession,
  query_name: :query_name,
  target_accession: :target_accession,
  target_name: :target_name
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ HmmerHit

Returns a new instance of HmmerHit.



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# File 'lib/rafflesia/sequences/hmmer_hit.rb', line 37

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @best_dom_bias = hash[:best_dom_bias]
  @best_dom_evalue = hash[:best_dom_evalue]
  @best_dom_score = hash[:best_dom_score]
  @description = hash[:description]
  @domain_number_estimation = hash[:domain_number_estimation] ? Rafflesia::HmmerDomainNumberEstimation.new(hash[:domain_number_estimation]) : nil
  @full_bias = hash[:full_bias]
  @full_evalue = hash[:full_evalue]
  @full_score = hash[:full_score]
  @query_accession = hash[:query_accession]
  @query_name = hash[:query_name]
  @target_accession = hash[:target_accession]
  @target_name = hash[:target_name]
end

Instance Attribute Details

#best_dom_bias ⇒ Object

Returns the value of attribute best_dom_bias.



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# File 'lib/rafflesia/sequences/hmmer_hit.rb', line 23

def best_dom_bias
  @best_dom_bias
end

#best_dom_evalue ⇒ Object

Returns the value of attribute best_dom_evalue.



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# File 'lib/rafflesia/sequences/hmmer_hit.rb', line 23

def best_dom_evalue
  @best_dom_evalue
end

#best_dom_score ⇒ Object

Returns the value of attribute best_dom_score.



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# File 'lib/rafflesia/sequences/hmmer_hit.rb', line 23

def best_dom_score
  @best_dom_score
end

#description ⇒ Object

Returns the value of attribute description.



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# File 'lib/rafflesia/sequences/hmmer_hit.rb', line 23

def description
  @description
end

#domain_number_estimation ⇒ Object

Returns the value of attribute domain_number_estimation.



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# File 'lib/rafflesia/sequences/hmmer_hit.rb', line 23

def domain_number_estimation
  @domain_number_estimation
end

#full_bias ⇒ Object

Returns the value of attribute full_bias.



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# File 'lib/rafflesia/sequences/hmmer_hit.rb', line 23

def full_bias
  @full_bias
end

#full_evalue ⇒ Object

Returns the value of attribute full_evalue.



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# File 'lib/rafflesia/sequences/hmmer_hit.rb', line 23

def full_evalue
  @full_evalue
end

#full_score ⇒ Object

Returns the value of attribute full_score.



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# File 'lib/rafflesia/sequences/hmmer_hit.rb', line 23

def full_score
  @full_score
end

#query_accession ⇒ Object

Returns the value of attribute query_accession.



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# File 'lib/rafflesia/sequences/hmmer_hit.rb', line 23

def query_accession
  @query_accession
end

#query_name ⇒ Object

Returns the value of attribute query_name.



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# File 'lib/rafflesia/sequences/hmmer_hit.rb', line 23

def query_name
  @query_name
end

#target_accession ⇒ Object

Returns the value of attribute target_accession.



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# File 'lib/rafflesia/sequences/hmmer_hit.rb', line 23

def target_accession
  @target_accession
end

#target_name ⇒ Object

Returns the value of attribute target_name.



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# File 'lib/rafflesia/sequences/hmmer_hit.rb', line 23

def target_name
  @target_name
end