Class: Rafflesia::HmmerDomainHit

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/sequences/hmmer_domain_hit.rb

Constant Summary collapse

HASH_ATTRS = 
{
  accuracy: :accuracy,
  ali_from: :ali_from,
  ali_to: :ali_to,
  description: :description,
  domain_bias: :domain_bias,
  domain_cevalue: :domain_cevalue,
  domain_count: :domain_count,
  domain_ievalue: :domain_ievalue,
  domain_index: :domain_index,
  domain_score: :domain_score,
  env_from: :env_from,
  env_to: :env_to,
  full_bias: :full_bias,
  full_evalue: :full_evalue,
  full_score: :full_score,
  hmm_from: :hmm_from,
  hmm_to: :hmm_to,
  query_accession: :query_accession,
  query_len: :query_len,
  query_name: :query_name,
  target_accession: :target_accession,
  target_len: :target_len,
  target_name: :target_name
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ HmmerDomainHit

Returns a new instance of HmmerDomainHit.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 59

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @accuracy = hash[:accuracy]
  @ali_from = hash[:ali_from]
  @ali_to = hash[:ali_to]
  @description = hash[:description]
  @domain_bias = hash[:domain_bias]
  @domain_cevalue = hash[:domain_cevalue]
  @domain_count = hash[:domain_count]
  @domain_ievalue = hash[:domain_ievalue]
  @domain_index = hash[:domain_index]
  @domain_score = hash[:domain_score]
  @env_from = hash[:env_from]
  @env_to = hash[:env_to]
  @full_bias = hash[:full_bias]
  @full_evalue = hash[:full_evalue]
  @full_score = hash[:full_score]
  @hmm_from = hash[:hmm_from]
  @hmm_to = hash[:hmm_to]
  @query_accession = hash[:query_accession]
  @query_len = hash[:query_len]
  @query_name = hash[:query_name]
  @target_accession = hash[:target_accession]
  @target_len = hash[:target_len]
  @target_name = hash[:target_name]
end

Instance Attribute Details

#accuracy ⇒ Object

Returns the value of attribute accuracy.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def accuracy
  @accuracy
end

#ali_from ⇒ Object

Returns the value of attribute ali_from.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def ali_from
  @ali_from
end

#ali_to ⇒ Object

Returns the value of attribute ali_to.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def ali_to
  @ali_to
end

#description ⇒ Object

Returns the value of attribute description.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def description
  @description
end

#domain_bias ⇒ Object

Returns the value of attribute domain_bias.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def domain_bias
  @domain_bias
end

#domain_cevalue ⇒ Object

Returns the value of attribute domain_cevalue.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def domain_cevalue
  @domain_cevalue
end

#domain_count ⇒ Object

Returns the value of attribute domain_count.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def domain_count
  @domain_count
end

#domain_ievalue ⇒ Object

Returns the value of attribute domain_ievalue.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def domain_ievalue
  @domain_ievalue
end

#domain_index ⇒ Object

Returns the value of attribute domain_index.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def domain_index
  @domain_index
end

#domain_score ⇒ Object

Returns the value of attribute domain_score.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def domain_score
  @domain_score
end

#env_from ⇒ Object

Returns the value of attribute env_from.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def env_from
  @env_from
end

#env_to ⇒ Object

Returns the value of attribute env_to.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def env_to
  @env_to
end

#full_bias ⇒ Object

Returns the value of attribute full_bias.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def full_bias
  @full_bias
end

#full_evalue ⇒ Object

Returns the value of attribute full_evalue.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def full_evalue
  @full_evalue
end

#full_score ⇒ Object

Returns the value of attribute full_score.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def full_score
  @full_score
end

#hmm_from ⇒ Object

Returns the value of attribute hmm_from.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def hmm_from
  @hmm_from
end

#hmm_to ⇒ Object

Returns the value of attribute hmm_to.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def hmm_to
  @hmm_to
end

#query_accession ⇒ Object

Returns the value of attribute query_accession.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def query_accession
  @query_accession
end

#query_len ⇒ Object

Returns the value of attribute query_len.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def query_len
  @query_len
end

#query_name ⇒ Object

Returns the value of attribute query_name.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def query_name
  @query_name
end

#target_accession ⇒ Object

Returns the value of attribute target_accession.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def target_accession
  @target_accession
end

#target_len ⇒ Object

Returns the value of attribute target_len.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def target_len
  @target_len
end

#target_name ⇒ Object

Returns the value of attribute target_name.



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# File 'lib/rafflesia/sequences/hmmer_domain_hit.rb', line 34

def target_name
  @target_name
end