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- SimAce
  - CLIAce::Sim
    CommandsAce::Sim::CLI
    Run < CommandAce::Sim::CLI::Commands
  - Error < StandardErrorAce::Sim
  - ModelsAce::Sim
    SimulationSession < ObjectAce::Sim::Models
  - MoleculesAce::Sim
    FinalSynthesisExecutor < ObjectAce::Sim::Molecules
    CommandRunner < ObjectAce::Sim::Molecules::FinalSynthesisExecutor
    SessionStore < ObjectAce::Sim::Molecules
    RunDirectoryExistsError < StandardErrorAce::Sim::Molecules::SessionStore
    SourceBundler < ObjectAce::Sim::Molecules
    CommandRunner < ObjectAce::Sim::Molecules::SourceBundler
    StageExecutor < ObjectAce::Sim::Molecules
    CommandRunner < ObjectAce::Sim::Molecules::StageExecutor
    SynthesisBuilder < ObjectAce::Sim::Molecules
  - OrganismsAce::Sim
    SimulationRunner < ObjectAce::Sim::Organisms
  - ValidationError < ErrorAce::Sim