Class: Rafflesia::PocketLigandDistancesData

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/proteins/pocket_ligand_distances_data.rb

Constant Summary collapse

HASH_ATTRS = 
{
  distance_metric: :distance_metric,
  distance_threshold_angstrom: :distance_threshold_angstrom,
  is_ligand_filtered: :is_ligand_filtered,
  is_truncated: :is_truncated,
  ligand_count: :ligand_count,
  ligand_group_count: :ligand_group_count,
  ligand_group_measurements: :ligand_group_measurements,
  ligand_grouping: :ligand_grouping,
  ligand_measurements: :ligand_measurements,
  ligands: :ligands,
  normalized_ligand_selectors: :normalized_ligand_selectors,
  pair_count: :pair_count,
  pairs: :pairs,
  pocket_count: :pocket_count,
  pockets: :pockets,
  prediction_format: :prediction_format,
  prediction_method: :prediction_method,
  prediction_path: :prediction_path,
  prediction_sha256: :prediction_sha_256,
  relation: :relation,
  returned_pair_count: :returned_pair_count,
  structure_id: :structure_id,
  threshold_hit_ligand_count: :threshold_hit_ligand_count,
  threshold_hit_ligand_group_count: :threshold_hit_ligand_group_count,
  top_n: :top_n,
  top_n_plus_extra: :top_n_plus_extra,
  top_n_plus_extra_threshold_hit_ligand_count: :top_n_plus_extra_threshold_hit_ligand_count,
  top_n_plus_extra_threshold_hit_ligand_group_count: :top_n_plus_extra_threshold_hit_ligand_group_count,
  top_n_reference: :top_n_reference,
  top_n_threshold_hit_ligand_count: :top_n_threshold_hit_ligand_count,
  top_n_threshold_hit_ligand_group_count: :top_n_threshold_hit_ligand_group_count
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ PocketLigandDistancesData

Returns a new instance of PocketLigandDistancesData.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 75

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @distance_metric = hash[:distance_metric]
  @distance_threshold_angstrom = hash[:distance_threshold_angstrom]
  @is_ligand_filtered = hash[:is_ligand_filtered]
  @is_truncated = hash[:is_truncated]
  @ligand_count = hash[:ligand_count]
  @ligand_group_count = hash[:ligand_group_count]
  @ligand_group_measurements = (hash[:ligand_group_measurements] || []).map { |item| item ? Rafflesia::PocketLigandMeasurement.new(item) : nil }
  @ligand_grouping = hash[:ligand_grouping]
  @ligand_measurements = (hash[:ligand_measurements] || []).map { |item| item ? Rafflesia::PocketLigandMeasurement.new(item) : nil }
  @ligands = (hash[:ligands] || []).map { |item| item ? Rafflesia::Ligand.new(item) : nil }
  @normalized_ligand_selectors = (hash[:normalized_ligand_selectors] || [])
  @pair_count = hash[:pair_count]
  @pairs = (hash[:pairs] || []).map { |item| item ? Rafflesia::PocketLigandDistance.new(item) : nil }
  @pocket_count = hash[:pocket_count]
  @pockets = (hash[:pockets] || []).map { |item| item ? Rafflesia::Pocket.new(item) : nil }
  @prediction_format = hash[:prediction_format]
  @prediction_method = hash[:prediction_method]
  @prediction_path = hash[:prediction_path]
  @prediction_sha_256 = hash[:prediction_sha256]
  @relation = hash[:relation] ? Rafflesia::RelationArtifactData.new(hash[:relation]) : nil
  @returned_pair_count = hash[:returned_pair_count]
  @structure_id = hash[:structure_id]
  @threshold_hit_ligand_count = hash[:threshold_hit_ligand_count]
  @threshold_hit_ligand_group_count = hash[:threshold_hit_ligand_group_count]
  @top_n = hash[:top_n]
  @top_n_plus_extra = hash[:top_n_plus_extra]
  @top_n_plus_extra_threshold_hit_ligand_count = hash[:top_n_plus_extra_threshold_hit_ligand_count]
  @top_n_plus_extra_threshold_hit_ligand_group_count = hash[:top_n_plus_extra_threshold_hit_ligand_group_count]
  @top_n_reference = hash[:top_n_reference]
  @top_n_threshold_hit_ligand_count = hash[:top_n_threshold_hit_ligand_count]
  @top_n_threshold_hit_ligand_group_count = hash[:top_n_threshold_hit_ligand_group_count]
end

Instance Attribute Details

#distance_metric ⇒ Object

Returns the value of attribute distance_metric.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def distance_metric
  @distance_metric
end

#distance_threshold_angstrom ⇒ Object

Returns the value of attribute distance_threshold_angstrom.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def distance_threshold_angstrom
  @distance_threshold_angstrom
end

#is_ligand_filtered ⇒ Object

Returns the value of attribute is_ligand_filtered.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def is_ligand_filtered
  @is_ligand_filtered
end

#is_truncated ⇒ Object

Returns the value of attribute is_truncated.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def is_truncated
  @is_truncated
end

#ligand_count ⇒ Object

Returns the value of attribute ligand_count.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def ligand_count
  @ligand_count
end

#ligand_group_count ⇒ Object

Returns the value of attribute ligand_group_count.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def ligand_group_count
  @ligand_group_count
end

#ligand_group_measurements ⇒ Object

Returns the value of attribute ligand_group_measurements.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def ligand_group_measurements
  @ligand_group_measurements
end

#ligand_grouping ⇒ Object

Returns the value of attribute ligand_grouping.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def ligand_grouping
  @ligand_grouping
end

#ligand_measurements ⇒ Object

Returns the value of attribute ligand_measurements.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def ligand_measurements
  @ligand_measurements
end

#ligands ⇒ Object

Returns the value of attribute ligands.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def ligands
  @ligands
end

#normalized_ligand_selectors ⇒ Object

Returns the value of attribute normalized_ligand_selectors.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def normalized_ligand_selectors
  @normalized_ligand_selectors
end

#pair_count ⇒ Object

Returns the value of attribute pair_count.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def pair_count
  @pair_count
end

#pairs ⇒ Object

Returns the value of attribute pairs.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def pairs
  @pairs
end

#pocket_count ⇒ Object

Returns the value of attribute pocket_count.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def pocket_count
  @pocket_count
end

#pockets ⇒ Object

Returns the value of attribute pockets.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def pockets
  @pockets
end

#prediction_format ⇒ Object

Returns the value of attribute prediction_format.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def prediction_format
  @prediction_format
end

#prediction_method ⇒ Object

Returns the value of attribute prediction_method.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def prediction_method
  @prediction_method
end

#prediction_path ⇒ Object

Returns the value of attribute prediction_path.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def prediction_path
  @prediction_path
end

#prediction_sha_256 ⇒ Object

Returns the value of attribute prediction_sha_256.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def prediction_sha_256
  @prediction_sha_256
end

#relation ⇒ Object

Returns the value of attribute relation.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def relation
  @relation
end

#returned_pair_count ⇒ Object

Returns the value of attribute returned_pair_count.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def returned_pair_count
  @returned_pair_count
end

#structure_id ⇒ Object

Returns the value of attribute structure_id.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def structure_id
  @structure_id
end

#threshold_hit_ligand_count ⇒ Object

Returns the value of attribute threshold_hit_ligand_count.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def threshold_hit_ligand_count
  @threshold_hit_ligand_count
end

#threshold_hit_ligand_group_count ⇒ Object

Returns the value of attribute threshold_hit_ligand_group_count.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def threshold_hit_ligand_group_count
  @threshold_hit_ligand_group_count
end

#top_n ⇒ Object

Returns the value of attribute top_n.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def top_n
  @top_n
end

#top_n_plus_extra ⇒ Object

Returns the value of attribute top_n_plus_extra.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def top_n_plus_extra
  @top_n_plus_extra
end

#top_n_plus_extra_threshold_hit_ligand_count ⇒ Object

Returns the value of attribute top_n_plus_extra_threshold_hit_ligand_count.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def top_n_plus_extra_threshold_hit_ligand_count
  @top_n_plus_extra_threshold_hit_ligand_count
end

#top_n_plus_extra_threshold_hit_ligand_group_count ⇒ Object

Returns the value of attribute top_n_plus_extra_threshold_hit_ligand_group_count.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def top_n_plus_extra_threshold_hit_ligand_group_count
  @top_n_plus_extra_threshold_hit_ligand_group_count
end

#top_n_reference ⇒ Object

Returns the value of attribute top_n_reference.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def top_n_reference
  @top_n_reference
end

#top_n_threshold_hit_ligand_count ⇒ Object

Returns the value of attribute top_n_threshold_hit_ligand_count.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def top_n_threshold_hit_ligand_count
  @top_n_threshold_hit_ligand_count
end

#top_n_threshold_hit_ligand_group_count ⇒ Object

Returns the value of attribute top_n_threshold_hit_ligand_group_count.



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# File 'lib/rafflesia/proteins/pocket_ligand_distances_data.rb', line 42

def top_n_threshold_hit_ligand_group_count
  @top_n_threshold_hit_ligand_group_count
end