Class: Rafflesia::PocketLigandMeasurement

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/proteins/pocket_ligand_measurement.rb

Constant Summary collapse

HASH_ATTRS = 
{
  distance_threshold_angstrom: :distance_threshold_angstrom,
  is_threshold_hit: :is_threshold_hit,
  is_top_n_plus_extra_threshold_hit: :is_top_n_plus_extra_threshold_hit,
  is_top_n_threshold_hit: :is_top_n_threshold_hit,
  ligand: :ligand,
  ligand_group_id: :ligand_group_id,
  ligand_group_key: :ligand_group_key,
  ligand_group_label: :ligand_group_label,
  ligand_group_ligand_count: :ligand_group_ligand_count,
  ligand_group_mode: :ligand_group_mode,
  ligand_id: :ligand_id,
  nearest_distance_angstrom: :nearest_distance_angstrom,
  nearest_pocket_id: :nearest_pocket_id,
  nearest_pocket_rank: :nearest_pocket_rank,
  top_n_nearest_distance_angstrom: :top_n_nearest_distance_angstrom,
  top_n_nearest_pocket_id: :top_n_nearest_pocket_id,
  top_n_nearest_pocket_rank: :top_n_nearest_pocket_rank,
  top_n_plus_extra_nearest_distance_angstrom: :top_n_plus_extra_nearest_distance_angstrom,
  top_n_plus_extra_nearest_pocket_id: :top_n_plus_extra_nearest_pocket_id,
  top_n_plus_extra_nearest_pocket_rank: :top_n_plus_extra_nearest_pocket_rank
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ PocketLigandMeasurement

Returns a new instance of PocketLigandMeasurement.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 53

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @distance_threshold_angstrom = hash[:distance_threshold_angstrom]
  @is_threshold_hit = hash[:is_threshold_hit]
  @is_top_n_plus_extra_threshold_hit = hash[:is_top_n_plus_extra_threshold_hit]
  @is_top_n_threshold_hit = hash[:is_top_n_threshold_hit]
  @ligand = hash[:ligand] ? Rafflesia::Ligand.new(hash[:ligand]) : nil
  @ligand_group_id = hash[:ligand_group_id]
  @ligand_group_key = hash[:ligand_group_key]
  @ligand_group_label = hash[:ligand_group_label]
  @ligand_group_ligand_count = hash[:ligand_group_ligand_count]
  @ligand_group_mode = hash[:ligand_group_mode]
  @ligand_id = hash[:ligand_id]
  @nearest_distance_angstrom = hash[:nearest_distance_angstrom]
  @nearest_pocket_id = hash[:nearest_pocket_id]
  @nearest_pocket_rank = hash[:nearest_pocket_rank]
  @top_n_nearest_distance_angstrom = hash[:top_n_nearest_distance_angstrom]
  @top_n_nearest_pocket_id = hash[:top_n_nearest_pocket_id]
  @top_n_nearest_pocket_rank = hash[:top_n_nearest_pocket_rank]
  @top_n_plus_extra_nearest_distance_angstrom = hash[:top_n_plus_extra_nearest_distance_angstrom]
  @top_n_plus_extra_nearest_pocket_id = hash[:top_n_plus_extra_nearest_pocket_id]
  @top_n_plus_extra_nearest_pocket_rank = hash[:top_n_plus_extra_nearest_pocket_rank]
end

Instance Attribute Details

#distance_threshold_angstrom ⇒ Object

Returns the value of attribute distance_threshold_angstrom.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def distance_threshold_angstrom
  @distance_threshold_angstrom
end

#is_threshold_hit ⇒ Object

Returns the value of attribute is_threshold_hit.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def is_threshold_hit
  @is_threshold_hit
end

#is_top_n_plus_extra_threshold_hit ⇒ Object

Returns the value of attribute is_top_n_plus_extra_threshold_hit.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def is_top_n_plus_extra_threshold_hit
  @is_top_n_plus_extra_threshold_hit
end

#is_top_n_threshold_hit ⇒ Object

Returns the value of attribute is_top_n_threshold_hit.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def is_top_n_threshold_hit
  @is_top_n_threshold_hit
end

#ligand ⇒ Object

Returns the value of attribute ligand.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def ligand
  @ligand
end

#ligand_group_id ⇒ Object

Returns the value of attribute ligand_group_id.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def ligand_group_id
  @ligand_group_id
end

#ligand_group_key ⇒ Object

Returns the value of attribute ligand_group_key.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def ligand_group_key
  @ligand_group_key
end

#ligand_group_label ⇒ Object

Returns the value of attribute ligand_group_label.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def ligand_group_label
  @ligand_group_label
end

#ligand_group_ligand_count ⇒ Object

Returns the value of attribute ligand_group_ligand_count.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def ligand_group_ligand_count
  @ligand_group_ligand_count
end

#ligand_group_mode ⇒ Object

Returns the value of attribute ligand_group_mode.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def ligand_group_mode
  @ligand_group_mode
end

#ligand_id ⇒ Object

Returns the value of attribute ligand_id.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def ligand_id
  @ligand_id
end

#nearest_distance_angstrom ⇒ Object

Returns the value of attribute nearest_distance_angstrom.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def nearest_distance_angstrom
  @nearest_distance_angstrom
end

#nearest_pocket_id ⇒ Object

Returns the value of attribute nearest_pocket_id.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def nearest_pocket_id
  @nearest_pocket_id
end

#nearest_pocket_rank ⇒ Object

Returns the value of attribute nearest_pocket_rank.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def nearest_pocket_rank
  @nearest_pocket_rank
end

#top_n_nearest_distance_angstrom ⇒ Object

Returns the value of attribute top_n_nearest_distance_angstrom.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def top_n_nearest_distance_angstrom
  @top_n_nearest_distance_angstrom
end

#top_n_nearest_pocket_id ⇒ Object

Returns the value of attribute top_n_nearest_pocket_id.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def top_n_nearest_pocket_id
  @top_n_nearest_pocket_id
end

#top_n_nearest_pocket_rank ⇒ Object

Returns the value of attribute top_n_nearest_pocket_rank.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def top_n_nearest_pocket_rank
  @top_n_nearest_pocket_rank
end

#top_n_plus_extra_nearest_distance_angstrom ⇒ Object

Returns the value of attribute top_n_plus_extra_nearest_distance_angstrom.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def top_n_plus_extra_nearest_distance_angstrom
  @top_n_plus_extra_nearest_distance_angstrom
end

#top_n_plus_extra_nearest_pocket_id ⇒ Object

Returns the value of attribute top_n_plus_extra_nearest_pocket_id.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def top_n_plus_extra_nearest_pocket_id
  @top_n_plus_extra_nearest_pocket_id
end

#top_n_plus_extra_nearest_pocket_rank ⇒ Object

Returns the value of attribute top_n_plus_extra_nearest_pocket_rank.



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# File 'lib/rafflesia/proteins/pocket_ligand_measurement.rb', line 31

def top_n_plus_extra_nearest_pocket_rank
  @top_n_plus_extra_nearest_pocket_rank
end