Class: Rafflesia::BlastSearchBenchmarkData

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/sequences/blast_search_benchmark_data.rb

Constant Summary collapse

HASH_ATTRS = 
{
  baseline: :baseline,
  baseline_backend: :baseline_backend,
  baseline_elapsed_ms: :baseline_elapsed_ms,
  baseline_hit_count: :baseline_hit_count,
  baseline_materialized_bytes: :baseline_materialized_bytes,
  benchmark_id: :benchmark_id,
  benchmark_object: :benchmark_object,
  byte_reduction_fraction: :byte_reduction_fraction,
  db: :db,
  gate: :gate,
  hit_overlap_fraction: :hit_overlap_fraction,
  manifest_path: :manifest_path,
  mean_rank_delta: :mean_rank_delta,
  object_native: :object_native,
  object_native_backend: :object_native_backend,
  object_native_block_cache_hits: :object_native_block_cache_hits,
  object_native_block_cache_misses: :object_native_block_cache_misses,
  object_native_cache_hit_fraction: :object_native_cache_hit_fraction,
  object_native_candidate_oids_bytes: :object_native_candidate_oids_bytes,
  object_native_elapsed_ms: :object_native_elapsed_ms,
  object_native_exact_pack_object_bytes: :object_native_exact_pack_object_bytes,
  object_native_exact_pack_object_reads: :object_native_exact_pack_object_reads,
  object_native_hit_count: :object_native_hit_count,
  object_native_local_control_bytes: :object_native_local_control_bytes,
  object_native_materialized_bytes: :object_native_materialized_bytes,
  object_native_object_bytes: :object_native_object_bytes,
  object_native_object_reads: :object_native_object_reads,
  object_native_routing_object_bytes: :object_native_routing_object_bytes,
  object_native_routing_object_reads: :object_native_routing_object_reads,
  passed: :passed,
  query: :query,
  recall_at_1: :recall_at_1,
  recall_at_10: :recall_at_10,
  routing_manifest_object_id: :routing_manifest_object_id,
  rows: :rows,
  seed_routing: :seed_routing,
  seed_routing_backend: :seed_routing_backend,
  seed_routing_block_cache_hits: :seed_routing_block_cache_hits,
  seed_routing_block_cache_misses: :seed_routing_block_cache_misses,
  seed_routing_cache_hit_fraction: :seed_routing_cache_hit_fraction,
  seed_routing_elapsed_ms: :seed_routing_elapsed_ms,
  seed_routing_hit_count: :seed_routing_hit_count,
  seed_routing_hit_overlap_fraction: :seed_routing_hit_overlap_fraction,
  seed_routing_materialized_bytes: :seed_routing_materialized_bytes,
  seed_routing_object_bytes: :seed_routing_object_bytes,
  seed_routing_object_reads: :seed_routing_object_reads,
  seed_routing_recall_at_1: :seed_routing_recall_at_1,
  seed_routing_recall_at_10: :seed_routing_recall_at_10
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ BlastSearchBenchmarkData

Returns a new instance of BlastSearchBenchmarkData.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 109

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @baseline = hash[:baseline] ? Rafflesia::BlastSearchData.new(hash[:baseline]) : nil
  @baseline_backend = hash[:baseline_backend]
  @baseline_elapsed_ms = hash[:baseline_elapsed_ms]
  @baseline_hit_count = hash[:baseline_hit_count]
  @baseline_materialized_bytes = hash[:baseline_materialized_bytes]
  @benchmark_id = hash[:benchmark_id]
  @benchmark_object = hash[:benchmark_object] ? Rafflesia::ObjectRef.new(hash[:benchmark_object]) : nil
  @byte_reduction_fraction = hash[:byte_reduction_fraction]
  @db = hash[:db]
  @gate = hash[:gate] ? Rafflesia::BlastSearchBenchmarkGate.new(hash[:gate]) : nil
  @hit_overlap_fraction = hash[:hit_overlap_fraction]
  @manifest_path = hash[:manifest_path]
  @mean_rank_delta = hash[:mean_rank_delta]
  @object_native = hash[:object_native] ? Rafflesia::BlastSearchData.new(hash[:object_native]) : nil
  @object_native_backend = hash[:object_native_backend]
  @object_native_block_cache_hits = hash[:object_native_block_cache_hits]
  @object_native_block_cache_misses = hash[:object_native_block_cache_misses]
  @object_native_cache_hit_fraction = hash[:object_native_cache_hit_fraction]
  @object_native_candidate_oids_bytes = hash[:object_native_candidate_oids_bytes]
  @object_native_elapsed_ms = hash[:object_native_elapsed_ms]
  @object_native_exact_pack_object_bytes = hash[:object_native_exact_pack_object_bytes]
  @object_native_exact_pack_object_reads = hash[:object_native_exact_pack_object_reads]
  @object_native_hit_count = hash[:object_native_hit_count]
  @object_native_local_control_bytes = hash[:object_native_local_control_bytes]
  @object_native_materialized_bytes = hash[:object_native_materialized_bytes]
  @object_native_object_bytes = hash[:object_native_object_bytes]
  @object_native_object_reads = hash[:object_native_object_reads]
  @object_native_routing_object_bytes = hash[:object_native_routing_object_bytes]
  @object_native_routing_object_reads = hash[:object_native_routing_object_reads]
  @passed = hash[:passed]
  @query = hash[:query]
  @recall_at_1 = hash[:recall_at_1]
  @recall_at_10 = hash[:recall_at_10]
  @routing_manifest_object_id = hash[:routing_manifest_object_id]
  @rows = (hash[:rows] || []).map { |item| item ? Rafflesia::BlastSearchBenchmarkRow.new(item) : nil }
  @seed_routing = hash[:seed_routing] ? Rafflesia::SequenceSearchData.new(hash[:seed_routing]) : nil
  @seed_routing_backend = hash[:seed_routing_backend]
  @seed_routing_block_cache_hits = hash[:seed_routing_block_cache_hits]
  @seed_routing_block_cache_misses = hash[:seed_routing_block_cache_misses]
  @seed_routing_cache_hit_fraction = hash[:seed_routing_cache_hit_fraction]
  @seed_routing_elapsed_ms = hash[:seed_routing_elapsed_ms]
  @seed_routing_hit_count = hash[:seed_routing_hit_count]
  @seed_routing_hit_overlap_fraction = hash[:seed_routing_hit_overlap_fraction]
  @seed_routing_materialized_bytes = hash[:seed_routing_materialized_bytes]
  @seed_routing_object_bytes = hash[:seed_routing_object_bytes]
  @seed_routing_object_reads = hash[:seed_routing_object_reads]
  @seed_routing_recall_at_1 = hash[:seed_routing_recall_at_1]
  @seed_routing_recall_at_10 = hash[:seed_routing_recall_at_10]
end

Instance Attribute Details

#baseline ⇒ Object

Returns the value of attribute baseline.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def baseline
  @baseline
end

#baseline_backend ⇒ Object

Returns the value of attribute baseline_backend.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def baseline_backend
  @baseline_backend
end

#baseline_elapsed_ms ⇒ Object

Returns the value of attribute baseline_elapsed_ms.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def baseline_elapsed_ms
  @baseline_elapsed_ms
end

#baseline_hit_count ⇒ Object

Returns the value of attribute baseline_hit_count.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def baseline_hit_count
  @baseline_hit_count
end

#baseline_materialized_bytes ⇒ Object

Returns the value of attribute baseline_materialized_bytes.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def baseline_materialized_bytes
  @baseline_materialized_bytes
end

#benchmark_id ⇒ Object

Returns the value of attribute benchmark_id.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def benchmark_id
  @benchmark_id
end

#benchmark_object ⇒ Object

Returns the value of attribute benchmark_object.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def benchmark_object
  @benchmark_object
end

#byte_reduction_fraction ⇒ Object

Returns the value of attribute byte_reduction_fraction.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def byte_reduction_fraction
  @byte_reduction_fraction
end

#db ⇒ Object

Returns the value of attribute db.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def db
  @db
end

#gate ⇒ Object

Returns the value of attribute gate.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def gate
  @gate
end

#hit_overlap_fraction ⇒ Object

Returns the value of attribute hit_overlap_fraction.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def hit_overlap_fraction
  @hit_overlap_fraction
end

#manifest_path ⇒ Object

Returns the value of attribute manifest_path.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def manifest_path
  @manifest_path
end

#mean_rank_delta ⇒ Object

Returns the value of attribute mean_rank_delta.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def mean_rank_delta
  @mean_rank_delta
end

#object_native ⇒ Object

Returns the value of attribute object_native.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def object_native
  @object_native
end

#object_native_backend ⇒ Object

Returns the value of attribute object_native_backend.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def object_native_backend
  @object_native_backend
end

#object_native_block_cache_hits ⇒ Object

Returns the value of attribute object_native_block_cache_hits.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def object_native_block_cache_hits
  @object_native_block_cache_hits
end

#object_native_block_cache_misses ⇒ Object

Returns the value of attribute object_native_block_cache_misses.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def object_native_block_cache_misses
  @object_native_block_cache_misses
end

#object_native_cache_hit_fraction ⇒ Object

Returns the value of attribute object_native_cache_hit_fraction.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def object_native_cache_hit_fraction
  @object_native_cache_hit_fraction
end

#object_native_candidate_oids_bytes ⇒ Object

Returns the value of attribute object_native_candidate_oids_bytes.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def object_native_candidate_oids_bytes
  @object_native_candidate_oids_bytes
end

#object_native_elapsed_ms ⇒ Object

Returns the value of attribute object_native_elapsed_ms.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def object_native_elapsed_ms
  @object_native_elapsed_ms
end

#object_native_exact_pack_object_bytes ⇒ Object

Returns the value of attribute object_native_exact_pack_object_bytes.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def object_native_exact_pack_object_bytes
  @object_native_exact_pack_object_bytes
end

#object_native_exact_pack_object_reads ⇒ Object

Returns the value of attribute object_native_exact_pack_object_reads.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def object_native_exact_pack_object_reads
  @object_native_exact_pack_object_reads
end

#object_native_hit_count ⇒ Object

Returns the value of attribute object_native_hit_count.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def object_native_hit_count
  @object_native_hit_count
end

#object_native_local_control_bytes ⇒ Object

Returns the value of attribute object_native_local_control_bytes.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def object_native_local_control_bytes
  @object_native_local_control_bytes
end

#object_native_materialized_bytes ⇒ Object

Returns the value of attribute object_native_materialized_bytes.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def object_native_materialized_bytes
  @object_native_materialized_bytes
end

#object_native_object_bytes ⇒ Object

Returns the value of attribute object_native_object_bytes.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def object_native_object_bytes
  @object_native_object_bytes
end

#object_native_object_reads ⇒ Object

Returns the value of attribute object_native_object_reads.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def object_native_object_reads
  @object_native_object_reads
end

#object_native_routing_object_bytes ⇒ Object

Returns the value of attribute object_native_routing_object_bytes.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def object_native_routing_object_bytes
  @object_native_routing_object_bytes
end

#object_native_routing_object_reads ⇒ Object

Returns the value of attribute object_native_routing_object_reads.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def object_native_routing_object_reads
  @object_native_routing_object_reads
end

#passed ⇒ Object

Returns the value of attribute passed.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def passed
  @passed
end

#query ⇒ Object

Returns the value of attribute query.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def query
  @query
end

#recall_at_1 ⇒ Object

Returns the value of attribute recall_at_1.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def recall_at_1
  @recall_at_1
end

#recall_at_10 ⇒ Object

Returns the value of attribute recall_at_10.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def recall_at_10
  @recall_at_10
end

#routing_manifest_object_id ⇒ Object

Returns the value of attribute routing_manifest_object_id.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def routing_manifest_object_id
  @routing_manifest_object_id
end

#rows ⇒ Object

Returns the value of attribute rows.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def rows
  @rows
end

#seed_routing ⇒ Object

Returns the value of attribute seed_routing.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def seed_routing
  @seed_routing
end

#seed_routing_backend ⇒ Object

Returns the value of attribute seed_routing_backend.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def seed_routing_backend
  @seed_routing_backend
end

#seed_routing_block_cache_hits ⇒ Object

Returns the value of attribute seed_routing_block_cache_hits.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def seed_routing_block_cache_hits
  @seed_routing_block_cache_hits
end

#seed_routing_block_cache_misses ⇒ Object

Returns the value of attribute seed_routing_block_cache_misses.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def seed_routing_block_cache_misses
  @seed_routing_block_cache_misses
end

#seed_routing_cache_hit_fraction ⇒ Object

Returns the value of attribute seed_routing_cache_hit_fraction.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def seed_routing_cache_hit_fraction
  @seed_routing_cache_hit_fraction
end

#seed_routing_elapsed_ms ⇒ Object

Returns the value of attribute seed_routing_elapsed_ms.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def seed_routing_elapsed_ms
  @seed_routing_elapsed_ms
end

#seed_routing_hit_count ⇒ Object

Returns the value of attribute seed_routing_hit_count.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def seed_routing_hit_count
  @seed_routing_hit_count
end

#seed_routing_hit_overlap_fraction ⇒ Object

Returns the value of attribute seed_routing_hit_overlap_fraction.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def seed_routing_hit_overlap_fraction
  @seed_routing_hit_overlap_fraction
end

#seed_routing_materialized_bytes ⇒ Object

Returns the value of attribute seed_routing_materialized_bytes.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def seed_routing_materialized_bytes
  @seed_routing_materialized_bytes
end

#seed_routing_object_bytes ⇒ Object

Returns the value of attribute seed_routing_object_bytes.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def seed_routing_object_bytes
  @seed_routing_object_bytes
end

#seed_routing_object_reads ⇒ Object

Returns the value of attribute seed_routing_object_reads.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def seed_routing_object_reads
  @seed_routing_object_reads
end

#seed_routing_recall_at_1 ⇒ Object

Returns the value of attribute seed_routing_recall_at_1.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def seed_routing_recall_at_1
  @seed_routing_recall_at_1
end

#seed_routing_recall_at_10 ⇒ Object

Returns the value of attribute seed_routing_recall_at_10.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_data.rb', line 59

def seed_routing_recall_at_10
  @seed_routing_recall_at_10
end