Class: Rafflesia::BlastSearchBenchmarkRow

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/sequences/blast_search_benchmark_row.rb

Constant Summary collapse

HASH_ATTRS = 
{
  baseline_elapsed_ms: :baseline_elapsed_ms,
  baseline_hit_count: :baseline_hit_count,
  hit_overlap_fraction: :hit_overlap_fraction,
  mean_rank_delta: :mean_rank_delta,
  object_native_elapsed_ms: :object_native_elapsed_ms,
  object_native_hit_count: :object_native_hit_count,
  overlap_count: :overlap_count,
  query: :query,
  recall_at_1: :recall_at_1,
  recall_at_10: :recall_at_10,
  seed_routing_elapsed_ms: :seed_routing_elapsed_ms,
  seed_routing_hit_count: :seed_routing_hit_count,
  seed_routing_hit_overlap_fraction: :seed_routing_hit_overlap_fraction,
  seed_routing_recall_at_1: :seed_routing_recall_at_1,
  seed_routing_recall_at_10: :seed_routing_recall_at_10
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ BlastSearchBenchmarkRow

Returns a new instance of BlastSearchBenchmarkRow.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_row.rb', line 43

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @baseline_elapsed_ms = hash[:baseline_elapsed_ms]
  @baseline_hit_count = hash[:baseline_hit_count]
  @hit_overlap_fraction = hash[:hit_overlap_fraction]
  @mean_rank_delta = hash[:mean_rank_delta]
  @object_native_elapsed_ms = hash[:object_native_elapsed_ms]
  @object_native_hit_count = hash[:object_native_hit_count]
  @overlap_count = hash[:overlap_count]
  @query = hash[:query]
  @recall_at_1 = hash[:recall_at_1]
  @recall_at_10 = hash[:recall_at_10]
  @seed_routing_elapsed_ms = hash[:seed_routing_elapsed_ms]
  @seed_routing_hit_count = hash[:seed_routing_hit_count]
  @seed_routing_hit_overlap_fraction = hash[:seed_routing_hit_overlap_fraction]
  @seed_routing_recall_at_1 = hash[:seed_routing_recall_at_1]
  @seed_routing_recall_at_10 = hash[:seed_routing_recall_at_10]
end

Instance Attribute Details

#baseline_elapsed_ms ⇒ Object

Returns the value of attribute baseline_elapsed_ms.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_row.rb', line 26

def baseline_elapsed_ms
  @baseline_elapsed_ms
end

#baseline_hit_count ⇒ Object

Returns the value of attribute baseline_hit_count.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_row.rb', line 26

def baseline_hit_count
  @baseline_hit_count
end

#hit_overlap_fraction ⇒ Object

Returns the value of attribute hit_overlap_fraction.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_row.rb', line 26

def hit_overlap_fraction
  @hit_overlap_fraction
end

#mean_rank_delta ⇒ Object

Returns the value of attribute mean_rank_delta.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_row.rb', line 26

def mean_rank_delta
  @mean_rank_delta
end

#object_native_elapsed_ms ⇒ Object

Returns the value of attribute object_native_elapsed_ms.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_row.rb', line 26

def object_native_elapsed_ms
  @object_native_elapsed_ms
end

#object_native_hit_count ⇒ Object

Returns the value of attribute object_native_hit_count.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_row.rb', line 26

def object_native_hit_count
  @object_native_hit_count
end

#overlap_count ⇒ Object

Returns the value of attribute overlap_count.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_row.rb', line 26

def overlap_count
  @overlap_count
end

#query ⇒ Object

Returns the value of attribute query.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_row.rb', line 26

def query
  @query
end

#recall_at_1 ⇒ Object

Returns the value of attribute recall_at_1.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_row.rb', line 26

def recall_at_1
  @recall_at_1
end

#recall_at_10 ⇒ Object

Returns the value of attribute recall_at_10.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_row.rb', line 26

def recall_at_10
  @recall_at_10
end

#seed_routing_elapsed_ms ⇒ Object

Returns the value of attribute seed_routing_elapsed_ms.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_row.rb', line 26

def seed_routing_elapsed_ms
  @seed_routing_elapsed_ms
end

#seed_routing_hit_count ⇒ Object

Returns the value of attribute seed_routing_hit_count.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_row.rb', line 26

def seed_routing_hit_count
  @seed_routing_hit_count
end

#seed_routing_hit_overlap_fraction ⇒ Object

Returns the value of attribute seed_routing_hit_overlap_fraction.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_row.rb', line 26

def seed_routing_hit_overlap_fraction
  @seed_routing_hit_overlap_fraction
end

#seed_routing_recall_at_1 ⇒ Object

Returns the value of attribute seed_routing_recall_at_1.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_row.rb', line 26

def seed_routing_recall_at_1
  @seed_routing_recall_at_1
end

#seed_routing_recall_at_10 ⇒ Object

Returns the value of attribute seed_routing_recall_at_10.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_row.rb', line 26

def seed_routing_recall_at_10
  @seed_routing_recall_at_10
end