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#accession Dratools::TraversalNode
#available_command Dratools::ExternalCommandRunner
#build_from_run_record Dratools::DownloadCandidateBuilder
#children Dratools::TraversalNode
#collect_accessions Dratools::AccessionInputCollector
#collect_run_records Dratools::RunRecordCollector
#content_lengths Dratools::DownloadService
#directory_url_for_protocol? Dratools::DownloadCandidate
#download Dratools::TraversalNode
#download? Dratools::TraversalNode
download_connect_timeout_seconds Dratools::Config
download_retry_count Dratools::Config
download_retry_wait_seconds Dratools::Config
download_stall_speed_bytes_per_second Dratools::Config
download_stall_timeout_seconds Dratools::Config
#download_url Dratools::ExternalCommandRunner
#downloads Dratools::TraversalNode
#error Dratools::TraversalNode
#errored? Dratools::TraversalNode
#errors Dratools::TraversalNode
#explore Dratools::RunRecordCollector
#fetch_record_for Dratools::AccessionResolver
#fetch_resource_record Dratools::DdbjResourceClient
#filename_for_protocol Dratools::DownloadCandidate
format Dratools::ByteFormatter
#ftp_url Dratools::DownloadCandidate
#initialize Dratools::TreeRenderer
#initialize Dratools::TraversalNode
#initialize Dratools::DownloadService
#initialize Dratools::AccessionResolver
#initialize Dratools::DownloadCandidate
#initialize Dratools::DdbjResourceClient
#initialize Dratools::RunRecordCollector
#initialize Dratools::Commands::BaseCommand
#initialize Dratools::CommandLineInterface
#initialize Dratools::ExternalCommandRunner
#initialize Dratools::AccessionInputCollector
invalid_environment_value! Dratools::Config
max_recursive_non_run_xrefs Dratools::Config
#md5 Dratools::DownloadCandidate
#md5_matches? Dratools::ChecksumVerifier
non_negative_integer Dratools::Config
#object_type Dratools::TraversalNode
#path Dratools::DownloadService::DownloadResult
positive_integer Dratools::Config
positive_integer_or_unlimited Dratools::Config
#probe_download Dratools::DownloadService
#probe_url Dratools::ExternalCommandRunner
#record Dratools::TraversalNode
#relation Dratools::TraversalNode
#render Dratools::TreeRenderer
#resolve_downloads Dratools::AccessionResolver
#resolve_downloads_from_record Dratools::AccessionResolver
#resolve_tree Dratools::AccessionResolver
#resolve_tree_from_record Dratools::AccessionResolver
#resource_type_for Dratools::AccessionResolver
#resource_type_for Dratools::AccessionResourceTypeClassifier
#run Dratools::Commands::BaseCommand
#run Dratools::CommandLineInterface
#run? Dratools::TraversalNode
#run_accession Dratools::DownloadCandidate
#run_accessions Dratools::TraversalNode
#run_records Dratools::TraversalNode
#save_download Dratools::DownloadService
#size Dratools::DownloadCandidate
size_max_direct_runs Dratools::Config
#skipped Dratools::DownloadService::DownloadResult
#skipped? Dratools::DownloadService::DownloadResult
start Dratools::CommandLineInterface
#to_s Dratools::DownloadService::DownloadResult
tree_max_direct_runs Dratools::Config
#type Dratools::TraversalNode
#type Dratools::DownloadCandidate
#url Dratools::TraversalNode
#url Dratools::DownloadCandidate
#url_for_protocol Dratools::DownloadCandidate
url_max_direct_runs Dratools::Config
#verify_md5! Dratools::ChecksumVerifier