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#== Chemicalml::Model::Node
#accept Chemicalml::Model::Node
#allows? Chemicalml::Dictionary::Enum
#array_from_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
#array_to_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
#arrow Chemicalml::Model::Reaction
atom_from_canonical Chemicalml::Cml::Translator
#atom_refs Chemicalml::Model::Bond
atom_to_canonical Chemicalml::Cml::Translator
#atoms Chemicalml::Model::Molecule
bond_from_canonical Chemicalml::Cml::Translator
bond_to_canonical Chemicalml::Cml::Translator
#bonds Chemicalml::Model::Molecule
builtin_names Chemicalml::Dictionary::Registry
builtin_qnames Chemicalml::Convention::Registry
#check Chemicalml::Convention::Constraint
#check Chemicalml::Convention::Constraint::NodeConstraint
#check Chemicalml::Convention::Molecular::Constraints::AtomIdsUniqueWithinMolecule
#check Chemicalml::Convention::Molecular::Constraints::BondMustReferenceAtomsInSameMolecule
#check_node Chemicalml::Convention::Constraint::NodeConstraint
#check_node Chemicalml::Convention::Dictionary::Constraints::EntryMustHaveIdAndTerm
#check_node Chemicalml::Convention::Molecular::Constraints::AtomArrayMustContainAtoms
#check_node Chemicalml::Convention::Compchem::Constraints::JobMustContainInitialization
#check_node Chemicalml::Convention::Dictionary::Constraints::EntryIdsUniqueWithinDictionary
#check_node Chemicalml::Convention::Compchem::Constraints::CompchemModuleMustContainJobList
#check_node Chemicalml::Convention::UnitDictionary::Constraints::UnitMustHaveSymbolAndUnitType
#check_node Chemicalml::Convention::UnitTypeDictionary::Constraints::UnitTypeMustHaveIdAndName
#children Chemicalml::Model::Node
#children Chemicalml::Model::Product
#children Chemicalml::Model::Document
#children Chemicalml::Model::Molecule
#children Chemicalml::Model::Property
#children Chemicalml::Model::Reactant
#children Chemicalml::Model::Reaction
#children Chemicalml::Model::Parameter
#children Chemicalml::Model::Substance
#children Chemicalml::Model::Module
#children Chemicalml::Model::ProductList
#children Chemicalml::Model::MetadataList
#children Chemicalml::Model::PropertyList
#children Chemicalml::Model::ReactantList
#children Chemicalml::Model::ReactionList
#children Chemicalml::Model::ParameterList
#closed? Chemicalml::Dictionary::Enum
#cml_order Chemicalml::Model::Bond
#collect_wire_nodes Chemicalml::Cml::Visitable
#columns Chemicalml::Model::Matrix
#concise Chemicalml::Model::Formula
#conditions_above Chemicalml::Model::Reaction
#conditions_below Chemicalml::Model::Reaction
#configuration Chemicalml::VersionedParser
#constraint Chemicalml::Convention::Violation
#constraint_count Chemicalml::Convention::Base
#constraints Chemicalml::Convention::Base
#content Chemicalml::Model::Name
#content Chemicalml::Model::Metadata
#context Chemicalml::ContextConfiguration
#context_id Chemicalml::ContextConfiguration
#convention Chemicalml::Model::Name
#convention Chemicalml::Model::Label
#convention Chemicalml::Model::Formula
#convention Chemicalml::Model::Metadata
#convention Chemicalml::Model::Property
#convention Chemicalml::Model::Parameter
#convention Chemicalml::Model::Module
#convention Chemicalml::Model::Identifier
#count Chemicalml::Model::Atom
#count Chemicalml::Model::Formula
#count Chemicalml::Model::Molecule
#create_context Chemicalml::ContextConfiguration
#data_type Chemicalml::Model::Matrix
#data_type Chemicalml::Model::Scalar
#data_type Chemicalml::Model::Array
#data_type Chemicalml::Dictionary::Entry
#declared_attribute? Chemicalml::Cml::Visitable
#declared_attribute_names Chemicalml::Cml::Visitable
default Chemicalml::Schema::Registry
#default_context_id Chemicalml::ContextConfiguration
define_wire_classes Chemicalml::Cml
#definition Chemicalml::Dictionary::Entry
#description Chemicalml::Dictionary::Entry
#description Chemicalml::Dictionary::Model
#dict_ref Chemicalml::Model::Name
#dict_ref Chemicalml::Model::Label
#dict_ref Chemicalml::Model::Matrix
#dict_ref Chemicalml::Model::Scalar
#dict_ref Chemicalml::Model::Formula
#dict_ref Chemicalml::Model::Property
#dict_ref Chemicalml::Model::Array
#dict_ref Chemicalml::Model::Parameter
#dict_ref Chemicalml::Model::Module
#dict_ref Chemicalml::Model::Identifier
#dict_ref Chemicalml::Model::MetadataList
#dict_ref Chemicalml::Model::PropertyList
#dict_ref Chemicalml::Model::ParameterList
#document_class Chemicalml::VersionedParser
#element Chemicalml::Model::Atom
#element_name Chemicalml::Cml::Visitable
ensure_registered! Chemicalml::Cml::Schema3
ensure_registered! Chemicalml::Cml::Schema24
#ensure_registered! Chemicalml::ContextConfiguration
#entries Chemicalml::Dictionary::Model
#entry_ids Chemicalml::Dictionary::Model
#enum Chemicalml::Dictionary::Entry
#eql? Chemicalml::Dictionary::Enum
#eql? Chemicalml::Dictionary::Link
#eql? Chemicalml::Dictionary::Entry
#eql? Chemicalml::Dictionary::Model
#eql? Chemicalml::Schema::Definition
#error? Chemicalml::Convention::Violation
#formal_charge Chemicalml::Model::Atom
#formal_charge Chemicalml::Model::Formula
#formal_charge Chemicalml::Model::Molecule
#formula_from_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
#formula_to_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
from_canonical Chemicalml::Cml::Translator
from_file Chemicalml::Dictionary::Loader
from_hash Chemicalml::Dictionary::Loader
#hash Chemicalml::Model::Node
#hash Chemicalml::Dictionary::Enum
#hash Chemicalml::Dictionary::Link
#hash Chemicalml::Dictionary::Entry
#hash Chemicalml::Dictionary::Model
#hash Chemicalml::Schema::Definition
#href Chemicalml::Dictionary::Link
#hydrogen_count Chemicalml::Model::Atom
#id Chemicalml::Model::Atom
#id Chemicalml::Model::Bond
#id Chemicalml::Model::Label
#id Chemicalml::Model::Matrix
#id Chemicalml::Model::Scalar
#id Chemicalml::Model::Formula
#id Chemicalml::Model::Metadata
#id Chemicalml::Model::Molecule
#id Chemicalml::Model::Property
#id Chemicalml::Model::Reaction
#id Chemicalml::Model::Array
#id Chemicalml::Model::Parameter
#id Chemicalml::Dictionary::Entry
#id Chemicalml::Model::Module
#id Chemicalml::Model::MetadataList
#id Chemicalml::Model::PropertyList
#id Chemicalml::Model::ParameterList
#identifiers Chemicalml::Model::Molecule
included Chemicalml::Cml::Base::Atom
included Chemicalml::Cml::Base::Bond
included Chemicalml::Cml::Base::List
included Chemicalml::Cml::Base::Name
included Chemicalml::Cml::Base::Unit
included Chemicalml::Cml::Base::Array
included Chemicalml::Cml::Base::Label
included Chemicalml::Cml::Base::Matrix
included Chemicalml::Cml::Base::Scalar
included Chemicalml::Cml::Base::Formula
included Chemicalml::Cml::Base::Product
included Chemicalml::Cml::Base::Document
included Chemicalml::Cml::Base::Metadata
included Chemicalml::Cml::Base::Molecule
included Chemicalml::Cml::Base::Property
included Chemicalml::Cml::Base::Reactant
included Chemicalml::Cml::Base::Reaction
included Chemicalml::Cml::Base::Parameter
included Chemicalml::Cml::Base::Substance
included Chemicalml::Cml::Base::UnitList
included Chemicalml::Cml::Base::UnitType
included Chemicalml::Cml::Base::AtomArray
included Chemicalml::Cml::Base::BondArray
included Chemicalml::Cml::Base::Module
included Chemicalml::Cml::Base::Dictionary
included Chemicalml::Cml::Base::Identifier
included Chemicalml::Cml::Base::AtomParity
included Chemicalml::Cml::Base::BondStereo
included Chemicalml::Cml::Base::ProductList
included Chemicalml::Cml::Base::MetadataList
included Chemicalml::Cml::Base::PropertyList
included Chemicalml::Cml::Base::ReactantList
included Chemicalml::Cml::Base::ReactionList
included Chemicalml::Cml::Base::ParameterList
included Chemicalml::Cml::Base::UnitTypeList
included Chemicalml::Cml::Base::DictionaryEntry
#initialize Chemicalml::Model::Atom
#initialize Chemicalml::Model::Bond
#initialize Chemicalml::Model::Name
#initialize Chemicalml::Model::Label
#initialize Chemicalml::Model::Matrix
#initialize Chemicalml::Model::Scalar
#initialize Chemicalml::Model::Formula
#initialize Chemicalml::Model::Product
#initialize Chemicalml::Model::Document
#initialize Chemicalml::Model::Metadata
#initialize Chemicalml::Model::Molecule
#initialize Chemicalml::Model::Property
#initialize Chemicalml::Model::Reactant
#initialize Chemicalml::Model::Reaction
#initialize Chemicalml::Dictionary::Enum
#initialize Chemicalml::Dictionary::Link
#initialize Chemicalml::Model::Array
#initialize Chemicalml::Model::Parameter
#initialize Chemicalml::Model::Substance
#initialize Chemicalml::Dictionary::Entry
#initialize Chemicalml::Dictionary::Model
#initialize Chemicalml::Model::Module
#initialize Chemicalml::Model::Identifier
#initialize Chemicalml::Schema::Definition
#initialize Chemicalml::Model::ProductList
#initialize Chemicalml::Model::MetadataList
#initialize Chemicalml::Model::PropertyList
#initialize Chemicalml::Model::ReactantList
#initialize Chemicalml::Model::ReactionList
#initialize Chemicalml::Convention::Violation
#initialize Chemicalml::Model::ParameterList
#inline Chemicalml::Model::Formula
#isotope Chemicalml::Model::Atom
#kind Chemicalml::Model::Bond
#kind Chemicalml::Dictionary::Enum
#label_from_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
#label_to_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
#links Chemicalml::Dictionary::Entry
#lists Chemicalml::Model::Module
load Chemicalml::Dictionary
load_builtin Chemicalml::Dictionary::Registry
load_by_prefix Chemicalml::Dictionary::Registry
#lone_pairs Chemicalml::Model::Atom
lookup Chemicalml::Convention
lookup Chemicalml::Schema::Registry
#lookup Chemicalml::Dictionary::Model
lookup Chemicalml::Convention::Registry
lookup Chemicalml::Dictionary::Registry
#lookup! Chemicalml::Dictionary::Model
lookup! Chemicalml::Dictionary::Registry
#matrix_from_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
#matrix_to_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
#message Chemicalml::Convention::Violation
#metadata Chemicalml::Model::MetadataList
#metadata_from_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
#metadata_lists Chemicalml::Model::Module
#metadata_to_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
#modules Chemicalml::Model::Module
#molecule Chemicalml::Model::Substance
molecule_from_canonical Chemicalml::Cml::Translator
molecule_to_canonical Chemicalml::Cml::Translator
#molecules Chemicalml::Model::Document
#molecules Chemicalml::Model::Module
#name Chemicalml::Model::Metadata
name_for_display Chemicalml::Convention::Constraint
#names Chemicalml::Model::Molecule
#namespace Chemicalml::Dictionary::Model
#namespace_uri Chemicalml::Convention::Base
namespace_uri Chemicalml::Convention::Compchem
namespace_uri Chemicalml::Convention::Molecular
namespace_uri Chemicalml::Convention::Dictionary
namespace_uri Chemicalml::Convention::UnitDictionary
namespace_uri Chemicalml::Convention::UnitTypeDictionary
#node_id Chemicalml::Cml::Visitable
#open? Chemicalml::Dictionary::Enum
#parameter_from_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
#parameter_lists Chemicalml::Model::Module
#parameter_to_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
#parameters Chemicalml::Model::ParameterList
parse Chemicalml
#parse Chemicalml::VersionedParser
parser_for Chemicalml
#path Chemicalml::Convention::Violation
#populate_context! Chemicalml::ContextConfiguration
#prefix Chemicalml::Dictionary::Model
#product_list Chemicalml::Model::Reaction
product_list_from_canonical Chemicalml::Cml::Translator
product_list_to_canonical Chemicalml::Cml::Translator
#products Chemicalml::Model::ProductList
#properties Chemicalml::Model::PropertyList
#property_from_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
#property_lists Chemicalml::Model::Module
#property_to_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
#qname Chemicalml::Convention::Base
qname Chemicalml::Convention::Compchem
qname Chemicalml::Convention::Molecular
qname Chemicalml::Convention::Dictionary
qname Chemicalml::Convention::UnitDictionary
qname Chemicalml::Convention::UnitTypeDictionary
#radical_electrons Chemicalml::Model::Atom
#reactant_list Chemicalml::Model::Reaction
reactant_list_from_canonical Chemicalml::Cml::Translator
reactant_list_to_canonical Chemicalml::Cml::Translator
#reactants Chemicalml::Model::ReactantList
reaction_from_canonical Chemicalml::Cml::Translator
#reaction_lists Chemicalml::Model::Document
reaction_to_canonical Chemicalml::Cml::Translator
#reactions Chemicalml::Model::Document
#reactions Chemicalml::Model::ReactionList
#register Chemicalml::Convention::Base
#register_elements! Chemicalml::ContextConfiguration
#register_model Chemicalml::ContextConfiguration
#register_models! Chemicalml::ContextConfiguration
register_models! Chemicalml::Cml::Schema3::Configuration
register_models! Chemicalml::Cml::Schema24::Configuration
#rel Chemicalml::Dictionary::Link
reset! Chemicalml::Convention::Registry
reset! Chemicalml::Dictionary::Registry
#reset_constraints! Chemicalml::Convention::Base
#role Chemicalml::Model::Substance
#rows Chemicalml::Model::Matrix
#ruby_namespace Chemicalml::Schema::Definition
#scalar_from_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
#scalar_to_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
schema Chemicalml::Cml::Schema3
schema Chemicalml::Cml::Schema24
serialize Chemicalml
#severity Chemicalml::Convention::Violation
short_name Chemicalml::Model::Node
#size Chemicalml::Model::Array
#source_code Chemicalml::Dictionary::Entry
#spin_multiplicity Chemicalml::Model::Atom
#substance Chemicalml::Model::Product
#substance Chemicalml::Model::Reactant
#term Chemicalml::Dictionary::Entry
#title Chemicalml::Model::Atom
#title Chemicalml::Model::Matrix
#title Chemicalml::Model::Scalar
#title Chemicalml::Model::Formula
#title Chemicalml::Model::Metadata
#title Chemicalml::Model::Molecule
#title Chemicalml::Model::Property
#title Chemicalml::Model::Reaction
#title Chemicalml::Dictionary::Link
#title Chemicalml::Model::Array
#title Chemicalml::Model::Parameter
#title Chemicalml::Model::Substance
#title Chemicalml::Dictionary::Model
#title Chemicalml::Model::Module
#title Chemicalml::Model::MetadataList
#title Chemicalml::Model::PropertyList
#title Chemicalml::Model::ParameterList
to_canonical Chemicalml::Cml::Translator
#to_h Chemicalml::Dictionary::Enum
#to_h Chemicalml::Dictionary::Link
#to_h Chemicalml::Dictionary::Entry
#to_h Chemicalml::Dictionary::Model
#to_s Chemicalml::Convention::Violation
#type Chemicalml::Model::Reaction
#unit_type Chemicalml::Dictionary::Entry
#units Chemicalml::Model::Matrix
#units Chemicalml::Model::Scalar
#units Chemicalml::Model::Array
#units Chemicalml::Dictionary::Entry
validate Chemicalml::Convention
#validate Chemicalml::Convention::Base
validate Chemicalml::Convention::Registry
#value Chemicalml::Model::Label
#value Chemicalml::Model::Scalar
#value Chemicalml::Model::Property
#value Chemicalml::Model::Parameter
#value Chemicalml::Model::Identifier
#value_attributes Chemicalml::Model::Atom
#value_attributes Chemicalml::Model::Bond
#value_attributes Chemicalml::Model::Name
#value_attributes Chemicalml::Model::Node
#value_attributes Chemicalml::Model::Label
#value_attributes Chemicalml::Model::Matrix
#value_attributes Chemicalml::Model::Scalar
#value_attributes Chemicalml::Model::Formula
#value_attributes Chemicalml::Model::Product
#value_attributes Chemicalml::Model::Document
#value_attributes Chemicalml::Model::Metadata
#value_attributes Chemicalml::Model::Molecule
#value_attributes Chemicalml::Model::Property
#value_attributes Chemicalml::Model::Reactant
#value_attributes Chemicalml::Model::Reaction
#value_attributes Chemicalml::Model::Array
#value_attributes Chemicalml::Model::Parameter
#value_attributes Chemicalml::Model::Substance
#value_attributes Chemicalml::Model::Module
#value_attributes Chemicalml::Model::Identifier
#value_attributes Chemicalml::Model::ProductList
#value_attributes Chemicalml::Model::MetadataList
#value_attributes Chemicalml::Model::PropertyList
#value_attributes Chemicalml::Model::ReactantList
#value_attributes Chemicalml::Model::ReactionList
#value_attributes Chemicalml::Model::ParameterList
#value_container_from_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
#value_container_to_canonical Chemicalml::Cml::Translator::ValueTranslations::ClassMethods
#values Chemicalml::Model::Matrix
#values Chemicalml::Dictionary::Enum
#values Chemicalml::Model::Array
#version Chemicalml::Schema::Definition
versions Chemicalml::Schema::Registry
#warning? Chemicalml::Convention::Violation
#wire_children Chemicalml::Cml::Visitable
#wire_namespace_constant Chemicalml::Schema::Definition
#wire_node? Chemicalml::Cml::Visitable
#xml_namespace Chemicalml::Schema::Definition
#xsd_full_path Chemicalml::Schema::Definition
#xsd_path Chemicalml::Schema::Definition