Module: USQualityCoreTestKit::ReferenceResolutionTest

Extended by:
Forwardable
Includes:
Inferno::DSL::FHIRResourceNavigation
Included in:
USQualityCoreV050::AdverseEventReferenceResolutionTest, USQualityCoreV050::AllergyIntoleranceReferenceResolutionTest, USQualityCoreV050::CarePlanReferenceResolutionTest, USQualityCoreV050::CareTeamReferenceResolutionTest, USQualityCoreV050::ConditionEncounterDiagnosisReferenceResolutionTest, USQualityCoreV050::ConditionProblemsHealthConcernsReferenceResolutionTest, USQualityCoreV050::CoverageReferenceResolutionTest, USQualityCoreV050::DevicerequestReferenceResolutionTest, USQualityCoreV050::DiagnosticReportLabReferenceResolutionTest, USQualityCoreV050::DiagnosticReportNoteReferenceResolutionTest, USQualityCoreV050::DocumentReferenceReferenceResolutionTest, USQualityCoreV050::EncounterReferenceResolutionTest, USQualityCoreV050::GoalReferenceResolutionTest, USQualityCoreV050::HeadOccipitalFrontalCircumferencePercentileReferenceResolutionTest, USQualityCoreV050::ImmunizationReferenceResolutionTest, USQualityCoreV050::ImmunizationnotdoneReferenceResolutionTest, USQualityCoreV050::LocationReferenceResolutionTest, USQualityCoreV050::MedicationadministrationReferenceResolutionTest, USQualityCoreV050::MedicationdispenseReferenceResolutionTest, USQualityCoreV050::MedicationdispensedeclinedReferenceResolutionTest, USQualityCoreV050::MedicationnotrequestedReferenceResolutionTest, USQualityCoreV050::MedicationrequestReferenceResolutionTest, USQualityCoreV050::ObservationClinicalResultReferenceResolutionTest, USQualityCoreV050::ObservationLabReferenceResolutionTest, USQualityCoreV050::ObservationScreeningAssessmentReferenceResolutionTest, USQualityCoreV050::PediatricBmiForAgeReferenceResolutionTest, USQualityCoreV050::PediatricWeightForHeightReferenceResolutionTest, USQualityCoreV050::PractitionerRoleReferenceResolutionTest, USQualityCoreV050::ProcedureReferenceResolutionTest, USQualityCoreV050::ProcedurenotdoneReferenceResolutionTest, USQualityCoreV050::ProvenanceReferenceResolutionTest, USQualityCoreV050::RelatedPersonReferenceResolutionTest, USQualityCoreV050::ServicenotrequestedReferenceResolutionTest, USQualityCoreV050::ServicerequestReferenceResolutionTest, USQualityCoreV050::SimpleObservationReferenceResolutionTest, USQualityCoreV050::SpecimenReferenceResolutionTest, USQualityCoreV050::TaskReferenceResolutionTest, USQualityCoreV050::TaskrejectedReferenceResolutionTest, USQualityCoreV050::UsCoreBloodPressureReferenceResolutionTest, USQualityCoreV050::UsCoreBmiReferenceResolutionTest, USQualityCoreV050::UsCoreBodyHeightReferenceResolutionTest, USQualityCoreV050::UsCoreBodyTemperatureReferenceResolutionTest, USQualityCoreV050::UsCoreBodyWeightReferenceResolutionTest, USQualityCoreV050::UsCoreHeartRateReferenceResolutionTest, USQualityCoreV050::UsCoreObservationOccupationReferenceResolutionTest, USQualityCoreV050::UsCoreObservationPregnancyintentReferenceResolutionTest, USQualityCoreV050::UsCoreObservationPregnancystatusReferenceResolutionTest, USQualityCoreV050::UsCorePulseOximetryReferenceResolutionTest, USQualityCoreV050::UsCoreRespiratoryRateReferenceResolutionTest, USQualityCoreV050::UsCoreSmokingstatusReferenceResolutionTest
Defined in:
lib/us_quality_core_test_kit/reference_resolution_test.rb

Instance Method Summary collapse

Instance Method Details

#must_support_references ⇒ Object 



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# File 'lib/us_quality_core_test_kit/reference_resolution_test.rb', line 62

def must_support_references
  metadata.must_supports[:elements].select { |element_definition| element_definition[:types]&.include?('Reference') }
end

#must_support_references_with_target_profile ⇒ Object 



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# File 'lib/us_quality_core_test_kit/reference_resolution_test.rb', line 66

def must_support_references_with_target_profile
  # mapping array of target_profiles to array of {path, target_profile} pair
  must_support_references.map do |element_definition|
    (element_definition[:target_profiles] || ['']).map do |target_profile|
      {
        path: element_definition[:path],
        target_profile: target_profile
      }
    end
  end.flatten
end

#no_resources_skip_message ⇒ Object 



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# File 'lib/us_quality_core_test_kit/reference_resolution_test.rb', line 57

def no_resources_skip_message
  "No #{resource_type} resources appear to be available. " \
    'Please use patients with more information.'
end

#perform_reference_resolution_test(resources) ⇒ Object 



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# File 'lib/us_quality_core_test_kit/reference_resolution_test.rb', line 12

def perform_reference_resolution_test(resources)
  skip_if resources.blank?, no_resources_skip_message

  pass if unresolved_references(resources).empty?

  skip "Could not resolve and validate any Must Support references for #{unresolved_references_strings.join(', ')}"
end

#record_resolved_reference(reference, target_profile) ⇒ Object 



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# File 'lib/us_quality_core_test_kit/reference_resolution_test.rb', line 28

def record_resolved_reference(reference, target_profile)
  saved_reference = resolved_references.find { |item| item[:reference] == reference.reference }

  if saved_reference.present?
    saved_reference[:profiles] << target_profile if target_profile.present? && !saved_reference[:profiles].include?(target_profile)
  else
    saved_reference = {
      reference: reference.reference,
      profiles: []
    }

    saved_reference[:profiles] << target_profile if target_profile.present?
    resolved_references.add(saved_reference)
  end
end

#reference_resolved?(reference, target_profile) ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/us_quality_core_test_kit/reference_resolution_test.rb', line 44

def reference_resolved?(reference, target_profile)
  resolved_references.any? do |item|
    item[:reference] == reference.reference &&
      (
        target_profile.blank? || item[:profiles].include?(target_profile)
      )
  end
end

#resolve_reference(reference) ⇒ Object 



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# File 'lib/us_quality_core_test_kit/reference_resolution_test.rb', line 140

def resolve_reference(reference)
  reference_type = reference.resource_type
  reference_id = reference.reference_id

  begin
    if reference.relative?
      begin
        reference.resource_class
      rescue NameError
        return nil
      end

      fhir_read(reference_type, reference_id)&.resource
    elsif reference.base_uri.chomp('/') == fhir_client.instance_variable_get(:@base_service_url).chomp('/')
      fhir_read(reference_type, reference_id)&.resource
    else
      get(reference.reference)&.resource
    end
  rescue StandardError => e
    Inferno::Application['logger'].error("Unable to resolve reference #{reference.reference}")
    Inferno::Application['logger'].error(e.full_message)
    nil
  end
end

#resolved_references ⇒ Object 



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# File 'lib/us_quality_core_test_kit/reference_resolution_test.rb', line 53

def resolved_references
  scratch[:resolved_references] ||= Set.new
end

#resource_is_valid_with_target_profile?(resource, target_profile) ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/us_quality_core_test_kit/reference_resolution_test.rb', line 165

def resource_is_valid_with_target_profile?(resource, target_profile)
  return true if target_profile.blank?

  resource_is_valid?(resource:, profile_url: target_profile, add_messages_to_runnable: false)
end

#unresolved_references(resources = []) ⇒ Object 



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# File 'lib/us_quality_core_test_kit/reference_resolution_test.rb', line 78

def unresolved_references(resources = [])
  @unresolved_references ||=
    must_support_references_with_target_profile.select do |reference_path_profile_pair|
      path = reference_path_profile_pair[:path]
      target_profile = reference_path_profile_pair[:target_profile]

      found_one_reference = false

      resolve_one_reference = resources.any? do |resource|
        value_found = resolve_path(resource, path).select { |value| value.is_a?(FHIR::Reference) }
        next if value_found.empty?

        found_one_reference = true

        value_found.any? do |reference|
          validate_reference_resolution(resource, reference, target_profile)
        end
      end

      found_one_reference && !resolve_one_reference
    end

  if metadata.must_supports[:choices].present?
    @unresolved_references.delete_if do |reference|
      choice_profiles = metadata.must_supports[:choices].find { |choice| choice[:target_profiles]&.include?(reference[:target_profile]) }

      choice_profiles.present? &&
        choice_profiles[:target_profiles]&.any? { |profile| @unresolved_references.none? { |element| element[:target_profile] == profile } }
    end
  end

  @unresolved_references
end

#unresolved_references_strings ⇒ Object 



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# File 'lib/us_quality_core_test_kit/reference_resolution_test.rb', line 20

def unresolved_references_strings
  unresolved_reference_hash =
    unresolved_references.each_with_object(Hash.new { |hash, key| hash[key] = [] }) do |missing, hash|
      hash[missing[:path]] << missing[:target_profile]
    end
  unresolved_reference_hash.map { |path, profiles| "#{path} element: Reference#{"(#{profiles.join('|')})" unless profiles.first.empty?}" }
end

#validate_reference_resolution(resource, reference, target_profile) ⇒ Object 



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# File 'lib/us_quality_core_test_kit/reference_resolution_test.rb', line 112

def validate_reference_resolution(resource, reference, target_profile)
  return true if reference_resolved?(reference, target_profile)

  if reference.contained?
    # if reference_id is blank it is referring to itself, so we know it exists
    return true if reference.reference_id.blank?

    return resource.contained.any? do |contained_resource|
      contained_resource&.id == reference.reference_id &&
      resource_is_valid_with_target_profile?(contained_resource, target_profile)
    end
  end

  reference_type = reference.resource_type
  reference_id = reference.reference_id

  resolved_resource = resolve_reference(reference)

  return false if resolved_resource.nil?

  return false unless resolved_resource.resourceType == reference_type && resolved_resource.id == reference_id

  return false unless resource_is_valid_with_target_profile?(resolved_resource, target_profile)

  record_resolved_reference(reference, target_profile)
  true
end