Class: StrainCode::Number

Inherits:
Object
  • Object
show all
Defined in:
lib/strain-code/number.rb

Instance Attribute Summary collapse

Class Method Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(number) ⇒ Number

Returns a new instance of Number.



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# File 'lib/strain-code/number.rb', line 10

def initialize(number)
  @ori_number = number.to_s.strip
  @code, @accession = ori_number.split(/[ :_]+/, 2)
  @code, @accession = @accession, @code if @accession.nil?
end

Instance Attribute Details

#accession ⇒ Object

Returns the value of attribute accession.



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# File 'lib/strain-code/number.rb', line 2

def accession
  @accession
end

#code ⇒ Object

Returns the value of attribute code.



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# File 'lib/strain-code/number.rb', line 2

def code
  @code
end

#ori_number ⇒ Object

Returns the value of attribute ori_number.



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# File 'lib/strain-code/number.rb', line 2

def ori_number
  @ori_number
end

Class Method Details

.strain_number(number) ⇒ Object 



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# File 'lib/strain-code/number.rb', line 5

def strain_number(number)
  new(StrainCode::Parser.clean(number))
end

Instance Method Details

#catalogue ⇒ Object 



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# File 'lib/strain-code/number.rb', line 27

def catalogue
  @catalogue ||= StrainCode.catalogue(code)
end

#number ⇒ Object 



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# File 'lib/strain-code/number.rb', line 16

def number
  catalogue ? [code, accession].compact.join(' ') : ori_number
end

#to_s ⇒ Object 



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# File 'lib/strain-code/number.rb', line 31

def to_s
  number
end

#url ⇒ Object 



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# File 'lib/strain-code/number.rb', line 20

def url
  return unless catalogue&.url_pattern && accession

  acc = catalogue&.number_tr ? accession.tr(*catalogue.number_tr) : accession
  catalogue.url_pattern % acc
end