Class: Rafflesia::VariantGenomicMapping

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/genomes/variant_genomic_mapping.rb

Constant Summary collapse

HASH_ATTRS = 
{
  protein_mappings: :protein_mappings,
  structure_mappings: :structure_mappings,
  transcript_mappings: :transcript_mappings,
  variant: :variant,
  warnings: :warnings
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ VariantGenomicMapping

Returns a new instance of VariantGenomicMapping.



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# File 'lib/rafflesia/genomes/variant_genomic_mapping.rb', line 23

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @protein_mappings = (hash[:protein_mappings] || []).map { |item| item ? Rafflesia::VariantProteinMapping.new(item) : nil }
  @structure_mappings = (hash[:structure_mappings] || []).map { |item| item ? Rafflesia::VariantStructureMapping.new(item) : nil }
  @transcript_mappings = (hash[:transcript_mappings] || []).map { |item| item ? Rafflesia::VariantTranscriptMapping.new(item) : nil }
  @variant = hash[:variant] ? Rafflesia::VariantRecord.new(hash[:variant]) : nil
  @warnings = (hash[:warnings] || []).map { |item| item ? Rafflesia::SearchWarning.new(item) : nil }
end

Instance Attribute Details

#protein_mappings ⇒ Object

Returns the value of attribute protein_mappings.



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# File 'lib/rafflesia/genomes/variant_genomic_mapping.rb', line 16

def protein_mappings
  @protein_mappings
end

#structure_mappings ⇒ Object

Returns the value of attribute structure_mappings.



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# File 'lib/rafflesia/genomes/variant_genomic_mapping.rb', line 16

def structure_mappings
  @structure_mappings
end

#transcript_mappings ⇒ Object

Returns the value of attribute transcript_mappings.



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# File 'lib/rafflesia/genomes/variant_genomic_mapping.rb', line 16

def transcript_mappings
  @transcript_mappings
end

#variant ⇒ Object

Returns the value of attribute variant.



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# File 'lib/rafflesia/genomes/variant_genomic_mapping.rb', line 16

def variant
  @variant
end

#warnings ⇒ Object

Returns the value of attribute warnings.



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# File 'lib/rafflesia/genomes/variant_genomic_mapping.rb', line 16

def warnings
  @warnings
end