Class: Rafflesia::StructureInspectData

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/proteins/structure_inspect_data.rb

Constant Summary collapse

HASH_ATTRS = 
{
  atom_count: :atom_count,
  attempted_refs: :attempted_refs,
  backend: :backend,
  bounds: :bounds,
  cache_status: :cache_status,
  centroid: :centroid,
  chains: :chains,
  completed_stage: :completed_stage,
  confidence_metric: :confidence_metric,
  elapsed_ms: :elapsed_ms,
  entity_candidates: :entity_candidates,
  format: :format,
  has_plddt_like_b_factor: :has_plddt_like_b_factor,
  inspect_status: :inspect_status,
  is_partial: :is_partial,
  mean_b_factor: :mean_b_factor,
  mean_confidence_value: :mean_confidence_value,
  mean_plddt: :mean_plddt,
  metadata: :metadata,
  objects: :objects,
  repeated_chain_groups: :repeated_chain_groups,
  residue_count: :residue_count,
  residue_ranges: :residue_ranges,
  residues: :residues,
  structure_id: :structure_id,
  timed_out: :timed_out,
  timeout_ms: :timeout_ms
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ StructureInspectData

Returns a new instance of StructureInspectData.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 67

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @atom_count = hash[:atom_count]
  @attempted_refs = (hash[:attempted_refs] || [])
  @backend = hash[:backend]
  @bounds = hash[:bounds] ? Rafflesia::CartesianBounds.new(hash[:bounds]) : nil
  @cache_status = hash[:cache_status]
  @centroid = (hash[:centroid] || [])
  @chains = (hash[:chains] || []).map { |item| item ? Rafflesia::ChainSummary.new(item) : nil }
  @completed_stage = hash[:completed_stage]
  @confidence_metric = hash[:confidence_metric]
  @elapsed_ms = hash[:elapsed_ms]
  @entity_candidates = (hash[:entity_candidates] || []).map { |item| item ? Rafflesia::StructureEntityCandidate.new(item) : nil }
  @format = hash[:format]
  @has_plddt_like_b_factor = hash[:has_plddt_like_b_factor]
  @inspect_status = hash[:inspect_status]
  @is_partial = hash[:is_partial]
  @mean_b_factor = hash[:mean_b_factor]
  @mean_confidence_value = hash[:mean_confidence_value]
  @mean_plddt = hash[:mean_plddt]
  @metadata = hash[:metadata] || {}
  @objects = (hash[:objects] || []).map { |item| item ? Rafflesia::ObjectRef.new(item) : nil }
  @repeated_chain_groups = (hash[:repeated_chain_groups] || []).map { |item| item ? Rafflesia::StructureRepeatedChainGroup.new(item) : nil }
  @residue_count = hash[:residue_count]
  @residue_ranges = (hash[:residue_ranges] || []).map { |item| item ? Rafflesia::ResidueRange.new(item) : nil }
  @residues = (hash[:residues] || []).map { |item| item ? Rafflesia::ResidueSummary.new(item) : nil }
  @structure_id = hash[:structure_id]
  @timed_out = hash[:timed_out]
  @timeout_ms = hash[:timeout_ms]
end

Instance Attribute Details

#atom_count ⇒ Object

Returns the value of attribute atom_count.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def atom_count
  @atom_count
end

#attempted_refs ⇒ Object

Returns the value of attribute attempted_refs.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def attempted_refs
  @attempted_refs
end

#backend ⇒ Object

Returns the value of attribute backend.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def backend
  @backend
end

#bounds ⇒ Object

Returns the value of attribute bounds.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def bounds
  @bounds
end

#cache_status ⇒ Object

Returns the value of attribute cache_status.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def cache_status
  @cache_status
end

#centroid ⇒ Object

Returns the value of attribute centroid.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def centroid
  @centroid
end

#chains ⇒ Object

Returns the value of attribute chains.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def chains
  @chains
end

#completed_stage ⇒ Object

Returns the value of attribute completed_stage.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def completed_stage
  @completed_stage
end

#confidence_metric ⇒ Object

Returns the value of attribute confidence_metric.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def confidence_metric
  @confidence_metric
end

#elapsed_ms ⇒ Object

Returns the value of attribute elapsed_ms.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def elapsed_ms
  @elapsed_ms
end

#entity_candidates ⇒ Object

Returns the value of attribute entity_candidates.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def entity_candidates
  @entity_candidates
end

#format ⇒ Object

Returns the value of attribute format.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def format
  @format
end

#has_plddt_like_b_factor ⇒ Object

Returns the value of attribute has_plddt_like_b_factor.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def has_plddt_like_b_factor
  @has_plddt_like_b_factor
end

#inspect_status ⇒ Object

Returns the value of attribute inspect_status.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def inspect_status
  @inspect_status
end

#is_partial ⇒ Object

Returns the value of attribute is_partial.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def is_partial
  @is_partial
end

#mean_b_factor ⇒ Object

Returns the value of attribute mean_b_factor.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def mean_b_factor
  @mean_b_factor
end

#mean_confidence_value ⇒ Object

Returns the value of attribute mean_confidence_value.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def mean_confidence_value
  @mean_confidence_value
end

#mean_plddt ⇒ Object

Returns the value of attribute mean_plddt.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def mean_plddt
  @mean_plddt
end

#metadata ⇒ Object

Returns the value of attribute metadata.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def metadata
  @metadata
end

#objects ⇒ Object

Returns the value of attribute objects.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def objects
  @objects
end

#repeated_chain_groups ⇒ Object

Returns the value of attribute repeated_chain_groups.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def repeated_chain_groups
  @repeated_chain_groups
end

#residue_count ⇒ Object

Returns the value of attribute residue_count.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def residue_count
  @residue_count
end

#residue_ranges ⇒ Object

Returns the value of attribute residue_ranges.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def residue_ranges
  @residue_ranges
end

#residues ⇒ Object

Returns the value of attribute residues.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def residues
  @residues
end

#structure_id ⇒ Object

Returns the value of attribute structure_id.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def structure_id
  @structure_id
end

#timed_out ⇒ Object

Returns the value of attribute timed_out.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def timed_out
  @timed_out
end

#timeout_ms ⇒ Object

Returns the value of attribute timeout_ms.



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# File 'lib/rafflesia/proteins/structure_inspect_data.rb', line 38

def timeout_ms
  @timeout_ms
end