Class: Rafflesia::StructureComparisonsExportRequest

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/proteins/structure_comparisons_export_request.rb

Constant Summary collapse

HASH_ATTRS = 
{
  database: :database,
  foldseek_binary_path: :foldseek_binary_path,
  max_comparisons: :max_comparisons,
  method: :method,
  output_format: :output_format,
  output_relation: :output_relation,
  pairs: :pairs,
  pairs_path: :pairs_path,
  pairs_table_object_id: :pairs_table_object_id,
  pairs_table_path: :pairs_table_path,
  partition_by: :partition_by,
  preview_limit: :preview_limit,
  relation: :relation,
  release: :release,
  sort_by: :sort_by,
  tmalign_binary_path: :tmalign_binary_path
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ StructureComparisonsExportRequest

Returns a new instance of StructureComparisonsExportRequest.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 45

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @database = hash[:database]
  @foldseek_binary_path = hash[:foldseek_binary_path]
  @max_comparisons = hash[:max_comparisons]
  @method = hash[:method]
  @output_format = hash[:output_format]
  @output_relation = hash[:output_relation]
  @pairs = (hash[:pairs] || []).map { |item| item ? Rafflesia::StructureComparisonPair.new(item) : nil }
  @pairs_path = hash[:pairs_path]
  @pairs_table_object_id = hash[:pairs_table_object_id]
  @pairs_table_path = hash[:pairs_table_path]
  @partition_by = (hash[:partition_by] || [])
  @preview_limit = hash[:preview_limit]
  @relation = hash[:relation]
  @release = hash[:release]
  @sort_by = (hash[:sort_by] || [])
  @tmalign_binary_path = hash[:tmalign_binary_path]
end

Instance Attribute Details

#database ⇒ Object

Returns the value of attribute database.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 27

def database
  @database
end

#foldseek_binary_path ⇒ Object

Returns the value of attribute foldseek_binary_path.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 27

def foldseek_binary_path
  @foldseek_binary_path
end

#max_comparisons ⇒ Object

Returns the value of attribute max_comparisons.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 27

def max_comparisons
  @max_comparisons
end

#method ⇒ Object

Returns the value of attribute method.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 27

def method
  @method
end

#output_format ⇒ Object

Returns the value of attribute output_format.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 27

def output_format
  @output_format
end

#output_relation ⇒ Object

Returns the value of attribute output_relation.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 27

def output_relation
  @output_relation
end

#pairs ⇒ Object

Returns the value of attribute pairs.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 27

def pairs
  @pairs
end

#pairs_path ⇒ Object

Returns the value of attribute pairs_path.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 27

def pairs_path
  @pairs_path
end

#pairs_table_object_id ⇒ Object

Returns the value of attribute pairs_table_object_id.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 27

def pairs_table_object_id
  @pairs_table_object_id
end

#pairs_table_path ⇒ Object

Returns the value of attribute pairs_table_path.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 27

def pairs_table_path
  @pairs_table_path
end

#partition_by ⇒ Object

Returns the value of attribute partition_by.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 27

def partition_by
  @partition_by
end

#preview_limit ⇒ Object

Returns the value of attribute preview_limit.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 27

def preview_limit
  @preview_limit
end

#relation ⇒ Object

Returns the value of attribute relation.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 27

def relation
  @relation
end

#release ⇒ Object

Returns the value of attribute release.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 27

def release
  @release
end

#sort_by ⇒ Object

Returns the value of attribute sort_by.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 27

def sort_by
  @sort_by
end

#tmalign_binary_path ⇒ Object

Returns the value of attribute tmalign_binary_path.



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# File 'lib/rafflesia/proteins/structure_comparisons_export_request.rb', line 27

def tmalign_binary_path
  @tmalign_binary_path
end