Class: Rafflesia::SimulationNativeContactFractionTableData

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb

Constant Summary collapse

HASH_ATTRS = 
{
  backend: :backend,
  end_frame: :end_frame,
  frame_count: :frame_count,
  method: :method,
  min_seq_sep: :min_seq_sep,
  native_contact_count: :native_contact_count,
  radius_angstrom: :radius_angstrom,
  reference_frame: :reference_frame,
  reference_source: :reference_source,
  reference_structure: :reference_structure,
  relation: :relation,
  row_count: :row_count,
  selected_frame_count: :selected_frame_count,
  selection: :selection,
  soft_cutoff_factor: :soft_cutoff_factor,
  start_frame: :start_frame,
  stride: :stride,
  topology: :topology,
  trajectory: :trajectory,
  trajectory_id: :trajectory_id,
  trajectory_manifest_object: :trajectory_manifest_object
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ SimulationNativeContactFractionTableData

Returns a new instance of SimulationNativeContactFractionTableData.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 55

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @backend = hash[:backend] ? Rafflesia::SimulationBackendEvidence.new(hash[:backend]) : nil
  @end_frame = hash[:end_frame]
  @frame_count = hash[:frame_count]
  @method = hash[:method]
  @min_seq_sep = hash[:min_seq_sep]
  @native_contact_count = hash[:native_contact_count]
  @radius_angstrom = hash[:radius_angstrom]
  @reference_frame = hash[:reference_frame]
  @reference_source = hash[:reference_source]
  @reference_structure = hash[:reference_structure] ? Rafflesia::SimulationInputRef.new(hash[:reference_structure]) : nil
  @relation = hash[:relation] ? Rafflesia::RelationArtifactData.new(hash[:relation]) : nil
  @row_count = hash[:row_count]
  @selected_frame_count = hash[:selected_frame_count]
  @selection = hash[:selection]
  @soft_cutoff_factor = hash[:soft_cutoff_factor]
  @start_frame = hash[:start_frame]
  @stride = hash[:stride]
  @topology = hash[:topology] ? Rafflesia::SimulationInputRef.new(hash[:topology]) : nil
  @trajectory = hash[:trajectory] ? Rafflesia::SimulationInputRef.new(hash[:trajectory]) : nil
  @trajectory_id = hash[:trajectory_id]
  @trajectory_manifest_object = hash[:trajectory_manifest_object] ? Rafflesia::ObjectRef.new(hash[:trajectory_manifest_object]) : nil
end

Instance Attribute Details

#backend ⇒ Object

Returns the value of attribute backend.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def backend
  @backend
end

#end_frame ⇒ Object

Returns the value of attribute end_frame.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def end_frame
  @end_frame
end

#frame_count ⇒ Object

Returns the value of attribute frame_count.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def frame_count
  @frame_count
end

#method ⇒ Object

Returns the value of attribute method.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def method
  @method
end

#min_seq_sep ⇒ Object

Returns the value of attribute min_seq_sep.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def min_seq_sep
  @min_seq_sep
end

#native_contact_count ⇒ Object

Returns the value of attribute native_contact_count.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def native_contact_count
  @native_contact_count
end

#radius_angstrom ⇒ Object

Returns the value of attribute radius_angstrom.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def radius_angstrom
  @radius_angstrom
end

#reference_frame ⇒ Object

Returns the value of attribute reference_frame.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def reference_frame
  @reference_frame
end

#reference_source ⇒ Object

Returns the value of attribute reference_source.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def reference_source
  @reference_source
end

#reference_structure ⇒ Object

Returns the value of attribute reference_structure.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def reference_structure
  @reference_structure
end

#relation ⇒ Object

Returns the value of attribute relation.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def relation
  @relation
end

#row_count ⇒ Object

Returns the value of attribute row_count.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def row_count
  @row_count
end

#selected_frame_count ⇒ Object

Returns the value of attribute selected_frame_count.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def selected_frame_count
  @selected_frame_count
end

#selection ⇒ Object

Returns the value of attribute selection.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def selection
  @selection
end

#soft_cutoff_factor ⇒ Object

Returns the value of attribute soft_cutoff_factor.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def soft_cutoff_factor
  @soft_cutoff_factor
end

#start_frame ⇒ Object

Returns the value of attribute start_frame.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def start_frame
  @start_frame
end

#stride ⇒ Object

Returns the value of attribute stride.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def stride
  @stride
end

#topology ⇒ Object

Returns the value of attribute topology.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def topology
  @topology
end

#trajectory ⇒ Object

Returns the value of attribute trajectory.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def trajectory
  @trajectory
end

#trajectory_id ⇒ Object

Returns the value of attribute trajectory_id.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def trajectory_id
  @trajectory_id
end

#trajectory_manifest_object ⇒ Object

Returns the value of attribute trajectory_manifest_object.



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# File 'lib/rafflesia/simulations/simulation_native_contact_fraction_table_data.rb', line 32

def trajectory_manifest_object
  @trajectory_manifest_object
end