Class: Rafflesia::SequenceInspectData

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/sequences/sequence_inspect_data.rb

Constant Summary collapse

HASH_ATTRS = 
{
  alphabet: :alphabet,
  ambiguous_count: :ambiguous_count,
  gap_count: :gap_count,
  length: :length,
  objects: :objects,
  residue_composition: :residue_composition,
  sequence_id: :sequence_id,
  sha256: :sha_256
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ SequenceInspectData

Returns a new instance of SequenceInspectData.



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# File 'lib/rafflesia/sequences/sequence_inspect_data.rb', line 29

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @alphabet = hash[:alphabet]
  @ambiguous_count = hash[:ambiguous_count]
  @gap_count = hash[:gap_count]
  @length = hash[:length]
  @objects = (hash[:objects] || []).map { |item| item ? Rafflesia::ObjectRef.new(item) : nil }
  @residue_composition = hash[:residue_composition] || {}
  @sequence_id = hash[:sequence_id]
  @sha_256 = hash[:sha256]
end

Instance Attribute Details

#alphabet ⇒ Object

Returns the value of attribute alphabet.



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# File 'lib/rafflesia/sequences/sequence_inspect_data.rb', line 19

def alphabet
  @alphabet
end

#ambiguous_count ⇒ Object

Returns the value of attribute ambiguous_count.



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# File 'lib/rafflesia/sequences/sequence_inspect_data.rb', line 19

def ambiguous_count
  @ambiguous_count
end

#gap_count ⇒ Object

Returns the value of attribute gap_count.



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# File 'lib/rafflesia/sequences/sequence_inspect_data.rb', line 19

def gap_count
  @gap_count
end

#length ⇒ Object

Returns the value of attribute length.



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# File 'lib/rafflesia/sequences/sequence_inspect_data.rb', line 19

def length
  @length
end

#objects ⇒ Object

Returns the value of attribute objects.



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# File 'lib/rafflesia/sequences/sequence_inspect_data.rb', line 19

def objects
  @objects
end

#residue_composition ⇒ Object

Returns the value of attribute residue_composition.



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# File 'lib/rafflesia/sequences/sequence_inspect_data.rb', line 19

def residue_composition
  @residue_composition
end

#sequence_id ⇒ Object

Returns the value of attribute sequence_id.



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# File 'lib/rafflesia/sequences/sequence_inspect_data.rb', line 19

def sequence_id
  @sequence_id
end

#sha_256 ⇒ Object

Returns the value of attribute sha_256.



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# File 'lib/rafflesia/sequences/sequence_inspect_data.rb', line 19

def sha_256
  @sha_256
end