Class: Rafflesia::SequenceCatalogManifest

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/sequences/sequence_catalog_manifest.rb

Constant Summary collapse

HASH_ATTRS = 
{
  catalog_id: :catalog_id,
  content_sha256: :content_sha_256,
  created_at: :created_at,
  dataset_name: :dataset_name,
  dataset_version: :dataset_version,
  entries: :entries,
  fasta_object: :fasta_object,
  kind: :kind,
  manifest_version: :manifest_version,
  name: :name,
  sequence_count: :sequence_count,
  source_database_snapshot: :source_database_snapshot,
  source_object: :source_object,
  source_object_id: :source_object_id,
  source_path: :source_path,
  source_tool_version: :source_tool_version,
  version: :version
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ SequenceCatalogManifest

Returns a new instance of SequenceCatalogManifest.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 47

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @catalog_id = hash[:catalog_id]
  @content_sha_256 = hash[:content_sha256]
  @created_at = hash[:created_at]
  @dataset_name = hash[:dataset_name]
  @dataset_version = hash[:dataset_version]
  @entries = (hash[:entries] || []).map { |item| item ? Rafflesia::SequenceCatalogEntry.new(item) : nil }
  @fasta_object = hash[:fasta_object] ? Rafflesia::ObjectRef.new(hash[:fasta_object]) : nil
  @kind = hash[:kind]
  @manifest_version = hash[:manifest_version]
  @name = hash[:name]
  @sequence_count = hash[:sequence_count]
  @source_database_snapshot = hash[:source_database_snapshot] ? Rafflesia::DatabaseSnapshot.new(hash[:source_database_snapshot]) : nil
  @source_object = hash[:source_object] ? Rafflesia::ObjectRef.new(hash[:source_object]) : nil
  @source_object_id = hash[:source_object_id]
  @source_path = hash[:source_path]
  @source_tool_version = hash[:source_tool_version] ? Rafflesia::ToolVersion.new(hash[:source_tool_version]) : nil
  @version = hash[:version]
end

Instance Attribute Details

#catalog_id ⇒ Object

Returns the value of attribute catalog_id.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def catalog_id
  @catalog_id
end

#content_sha_256 ⇒ Object

Returns the value of attribute content_sha_256.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def content_sha_256
  @content_sha_256
end

#created_at ⇒ Object

Returns the value of attribute created_at.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def created_at
  @created_at
end

#dataset_name ⇒ Object

Returns the value of attribute dataset_name.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def dataset_name
  @dataset_name
end

#dataset_version ⇒ Object

Returns the value of attribute dataset_version.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def dataset_version
  @dataset_version
end

#entries ⇒ Object

Returns the value of attribute entries.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def entries
  @entries
end

#fasta_object ⇒ Object

Returns the value of attribute fasta_object.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def fasta_object
  @fasta_object
end

#kind ⇒ Object

Returns the value of attribute kind.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def kind
  @kind
end

#manifest_version ⇒ Object

Returns the value of attribute manifest_version.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def manifest_version
  @manifest_version
end

#name ⇒ Object

Returns the value of attribute name.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def name
  @name
end

#sequence_count ⇒ Object

Returns the value of attribute sequence_count.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def sequence_count
  @sequence_count
end

#source_database_snapshot ⇒ Object

Returns the value of attribute source_database_snapshot.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def source_database_snapshot
  @source_database_snapshot
end

#source_object ⇒ Object

Returns the value of attribute source_object.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def source_object
  @source_object
end

#source_object_id ⇒ Object

Returns the value of attribute source_object_id.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def source_object_id
  @source_object_id
end

#source_path ⇒ Object

Returns the value of attribute source_path.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def source_path
  @source_path
end

#source_tool_version ⇒ Object

Returns the value of attribute source_tool_version.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def source_tool_version
  @source_tool_version
end

#version ⇒ Object

Returns the value of attribute version.



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# File 'lib/rafflesia/sequences/sequence_catalog_manifest.rb', line 28

def version
  @version
end