Class: Rafflesia::SecondaryStructureData

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/proteins/secondary_structure_data.rb

Constant Summary collapse

HASH_ATTRS = 
{
  chains: :chains,
  relation: :relation,
  residue_count: :residue_count,
  residues: :residues,
  structure_id: :structure_id,
  summary: :summary
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ SecondaryStructureData

Returns a new instance of SecondaryStructureData.



25
26
27
28
29
30
31
32
33
34
 
# File 'lib/rafflesia/proteins/secondary_structure_data.rb', line 25

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @chains = (hash[:chains] || []).map { |item| item ? Rafflesia::SecondaryStructureChain.new(item) : nil }
  @relation = hash[:relation] ? Rafflesia::RelationArtifactData.new(hash[:relation]) : nil
  @residue_count = hash[:residue_count]
  @residues = (hash[:residues] || []).map { |item| item ? Rafflesia::SecondaryStructureResidue.new(item) : nil }
  @structure_id = hash[:structure_id]
  @summary = hash[:summary] ? Rafflesia::SecondaryStructureSummary.new(hash[:summary]) : nil
end

Instance Attribute Details

#chains ⇒ Object

Returns the value of attribute chains.



17
18
19
 
# File 'lib/rafflesia/proteins/secondary_structure_data.rb', line 17

def chains
  @chains
end

#relation ⇒ Object

Returns the value of attribute relation.



17
18
19
 
# File 'lib/rafflesia/proteins/secondary_structure_data.rb', line 17

def relation
  @relation
end

#residue_count ⇒ Object

Returns the value of attribute residue_count.



17
18
19
 
# File 'lib/rafflesia/proteins/secondary_structure_data.rb', line 17

def residue_count
  @residue_count
end

#residues ⇒ Object

Returns the value of attribute residues.



17
18
19
 
# File 'lib/rafflesia/proteins/secondary_structure_data.rb', line 17

def residues
  @residues
end

#structure_id ⇒ Object

Returns the value of attribute structure_id.



17
18
19
 
# File 'lib/rafflesia/proteins/secondary_structure_data.rb', line 17

def structure_id
  @structure_id
end

#summary ⇒ Object

Returns the value of attribute summary.



17
18
19
 
# File 'lib/rafflesia/proteins/secondary_structure_data.rb', line 17

def summary
  @summary
end