Class: Rafflesia::MsaArtifactManifest

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/cache/msa_artifact_manifest.rb

Constant Summary collapse

HASH_ATTRS = 
{
  alignment_object: :alignment_object,
  alignment_object_id: :alignment_object_id,
  alignment_path: :alignment_path,
  backend: :backend,
  cache_hit: :cache_hit,
  cache_key: :cache_key,
  cache_mode: :cache_mode,
  command: :command,
  dry_run: :dry_run,
  hit_source: :hit_source,
  homology_search_id: :homology_search_id,
  input_object: :input_object,
  input_object_id: :input_object_id,
  input_path: :input_path,
  inspection: :inspection,
  kind: :kind,
  log_object: :log_object,
  manifest_version: :manifest_version,
  operation_id: :operation_id,
  parameters: :parameters,
  profile_object: :profile_object,
  relation: :relation,
  search_backend: :search_backend,
  search_object_id: :search_object_id,
  selected_sequence_count: :selected_sequence_count,
  selected_sequence_ids: :selected_sequence_ids,
  sequence_catalog_object: :sequence_catalog_object,
  sequence_catalog_object_id: :sequence_catalog_object_id,
  tool_versions: :tool_versions
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ MsaArtifactManifest

Returns a new instance of MsaArtifactManifest.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 71

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @alignment_object = hash[:alignment_object] ? Rafflesia::ObjectRef.new(hash[:alignment_object]) : nil
  @alignment_object_id = hash[:alignment_object_id]
  @alignment_path = hash[:alignment_path]
  @backend = hash[:backend]
  @cache_hit = hash[:cache_hit]
  @cache_key = hash[:cache_key]
  @cache_mode = hash[:cache_mode]
  @command = (hash[:command] || [])
  @dry_run = hash[:dry_run]
  @hit_source = hash[:hit_source]
  @homology_search_id = hash[:homology_search_id]
  @input_object = hash[:input_object] ? Rafflesia::ObjectRef.new(hash[:input_object]) : nil
  @input_object_id = hash[:input_object_id]
  @input_path = hash[:input_path]
  @inspection = hash[:inspection] ? Rafflesia::MsaInspectData.new(hash[:inspection]) : nil
  @kind = hash[:kind]
  @log_object = hash[:log_object] ? Rafflesia::ObjectRef.new(hash[:log_object]) : nil
  @manifest_version = hash[:manifest_version]
  @operation_id = hash[:operation_id]
  @parameters = hash[:parameters] || {}
  @profile_object = hash[:profile_object] ? Rafflesia::ObjectRef.new(hash[:profile_object]) : nil
  @relation = hash[:relation] ? Rafflesia::RelationArtifactData.new(hash[:relation]) : nil
  @search_backend = hash[:search_backend]
  @search_object_id = hash[:search_object_id]
  @selected_sequence_count = hash[:selected_sequence_count]
  @selected_sequence_ids = (hash[:selected_sequence_ids] || [])
  @sequence_catalog_object = hash[:sequence_catalog_object] ? Rafflesia::ObjectRef.new(hash[:sequence_catalog_object]) : nil
  @sequence_catalog_object_id = hash[:sequence_catalog_object_id]
  @tool_versions = (hash[:tool_versions] || []).map { |item| item ? Rafflesia::ToolVersion.new(item) : nil }
end

Instance Attribute Details

#alignment_object ⇒ Object

Returns the value of attribute alignment_object.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def alignment_object
  @alignment_object
end

#alignment_object_id ⇒ Object

Returns the value of attribute alignment_object_id.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def alignment_object_id
  @alignment_object_id
end

#alignment_path ⇒ Object

Returns the value of attribute alignment_path.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def alignment_path
  @alignment_path
end

#backend ⇒ Object

Returns the value of attribute backend.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def backend
  @backend
end

#cache_hit ⇒ Object

Returns the value of attribute cache_hit.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def cache_hit
  @cache_hit
end

#cache_key ⇒ Object

Returns the value of attribute cache_key.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def cache_key
  @cache_key
end

#cache_mode ⇒ Object

Returns the value of attribute cache_mode.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def cache_mode
  @cache_mode
end

#command ⇒ Object

Returns the value of attribute command.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def command
  @command
end

#dry_run ⇒ Object

Returns the value of attribute dry_run.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def dry_run
  @dry_run
end

#hit_source ⇒ Object

Returns the value of attribute hit_source.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def hit_source
  @hit_source
end

#homology_search_id ⇒ Object

Returns the value of attribute homology_search_id.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def homology_search_id
  @homology_search_id
end

#input_object ⇒ Object

Returns the value of attribute input_object.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def input_object
  @input_object
end

#input_object_id ⇒ Object

Returns the value of attribute input_object_id.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def input_object_id
  @input_object_id
end

#input_path ⇒ Object

Returns the value of attribute input_path.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def input_path
  @input_path
end

#inspection ⇒ Object

Returns the value of attribute inspection.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def inspection
  @inspection
end

#kind ⇒ Object

Returns the value of attribute kind.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def kind
  @kind
end

#log_object ⇒ Object

Returns the value of attribute log_object.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def log_object
  @log_object
end

#manifest_version ⇒ Object

Returns the value of attribute manifest_version.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def manifest_version
  @manifest_version
end

#operation_id ⇒ Object

Returns the value of attribute operation_id.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def operation_id
  @operation_id
end

#parameters ⇒ Object

Returns the value of attribute parameters.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def parameters
  @parameters
end

#profile_object ⇒ Object

Returns the value of attribute profile_object.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def profile_object
  @profile_object
end

#relation ⇒ Object

Returns the value of attribute relation.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def relation
  @relation
end

#search_backend ⇒ Object

Returns the value of attribute search_backend.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def search_backend
  @search_backend
end

#search_object_id ⇒ Object

Returns the value of attribute search_object_id.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def search_object_id
  @search_object_id
end

#selected_sequence_count ⇒ Object

Returns the value of attribute selected_sequence_count.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def selected_sequence_count
  @selected_sequence_count
end

#selected_sequence_ids ⇒ Object

Returns the value of attribute selected_sequence_ids.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def selected_sequence_ids
  @selected_sequence_ids
end

#sequence_catalog_object ⇒ Object

Returns the value of attribute sequence_catalog_object.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def sequence_catalog_object
  @sequence_catalog_object
end

#sequence_catalog_object_id ⇒ Object

Returns the value of attribute sequence_catalog_object_id.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def sequence_catalog_object_id
  @sequence_catalog_object_id
end

#tool_versions ⇒ Object

Returns the value of attribute tool_versions.



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# File 'lib/rafflesia/cache/msa_artifact_manifest.rb', line 40

def tool_versions
  @tool_versions
end