Class: Rafflesia::MrcHeaderMetadata

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/artifacts/mrc_header_metadata.rb

Constant Summary collapse

HASH_ATTRS = 
{
  axis_order: :axis_order,
  cell_angles: :cell_angles,
  cell_angstrom: :cell_angstrom,
  columns: :columns,
  endian: :endian,
  grid_columns: :grid_columns,
  grid_rows: :grid_rows,
  grid_sections: :grid_sections,
  header_only: :header_only,
  header_size_bytes: :header_size_bytes,
  machine_stamp: :machine_stamp,
  max_density: :max_density,
  mean_density: :mean_density,
  min_density: :min_density,
  mode: :mode,
  origin_angstrom: :origin_angstrom,
  parser: :parser,
  rms_density: :rms_density,
  rows: :rows,
  sections: :sections,
  space_group_number: :space_group_number,
  symmetry_bytes: :symmetry_bytes,
  voxel_size_angstrom: :voxel_size_angstrom
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ MrcHeaderMetadata

Returns a new instance of MrcHeaderMetadata.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 59

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @axis_order = (hash[:axis_order] || [])
  @cell_angles = (hash[:cell_angles] || [])
  @cell_angstrom = (hash[:cell_angstrom] || [])
  @columns = hash[:columns]
  @endian = hash[:endian]
  @grid_columns = hash[:grid_columns]
  @grid_rows = hash[:grid_rows]
  @grid_sections = hash[:grid_sections]
  @header_only = hash[:header_only]
  @header_size_bytes = hash[:header_size_bytes]
  @machine_stamp = hash[:machine_stamp]
  @max_density = hash[:max_density]
  @mean_density = hash[:mean_density]
  @min_density = hash[:min_density]
  @mode = hash[:mode]
  @origin_angstrom = (hash[:origin_angstrom] || [])
  @parser = hash[:parser] ? Rafflesia::MapParserMetadata.new(hash[:parser]) : nil
  @rms_density = hash[:rms_density]
  @rows = hash[:rows]
  @sections = hash[:sections]
  @space_group_number = hash[:space_group_number]
  @symmetry_bytes = hash[:symmetry_bytes]
  @voxel_size_angstrom = (hash[:voxel_size_angstrom] || [])
end

Instance Attribute Details

#axis_order ⇒ Object

Returns the value of attribute axis_order.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def axis_order
  @axis_order
end

#cell_angles ⇒ Object

Returns the value of attribute cell_angles.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def cell_angles
  @cell_angles
end

#cell_angstrom ⇒ Object

Returns the value of attribute cell_angstrom.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def cell_angstrom
  @cell_angstrom
end

#columns ⇒ Object

Returns the value of attribute columns.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def columns
  @columns
end

#endian ⇒ Object

Returns the value of attribute endian.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def endian
  @endian
end

#grid_columns ⇒ Object

Returns the value of attribute grid_columns.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def grid_columns
  @grid_columns
end

#grid_rows ⇒ Object

Returns the value of attribute grid_rows.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def grid_rows
  @grid_rows
end

#grid_sections ⇒ Object

Returns the value of attribute grid_sections.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def grid_sections
  @grid_sections
end

#header_only ⇒ Object

Returns the value of attribute header_only.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def header_only
  @header_only
end

#header_size_bytes ⇒ Object

Returns the value of attribute header_size_bytes.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def header_size_bytes
  @header_size_bytes
end

#machine_stamp ⇒ Object

Returns the value of attribute machine_stamp.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def machine_stamp
  @machine_stamp
end

#max_density ⇒ Object

Returns the value of attribute max_density.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def max_density
  @max_density
end

#mean_density ⇒ Object

Returns the value of attribute mean_density.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def mean_density
  @mean_density
end

#min_density ⇒ Object

Returns the value of attribute min_density.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def min_density
  @min_density
end

#mode ⇒ Object

Returns the value of attribute mode.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def mode
  @mode
end

#origin_angstrom ⇒ Object

Returns the value of attribute origin_angstrom.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def origin_angstrom
  @origin_angstrom
end

#parser ⇒ Object

Returns the value of attribute parser.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def parser
  @parser
end

#rms_density ⇒ Object

Returns the value of attribute rms_density.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def rms_density
  @rms_density
end

#rows ⇒ Object

Returns the value of attribute rows.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def rows
  @rows
end

#sections ⇒ Object

Returns the value of attribute sections.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def sections
  @sections
end

#space_group_number ⇒ Object

Returns the value of attribute space_group_number.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def space_group_number
  @space_group_number
end

#symmetry_bytes ⇒ Object

Returns the value of attribute symmetry_bytes.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def symmetry_bytes
  @symmetry_bytes
end

#voxel_size_angstrom ⇒ Object

Returns the value of attribute voxel_size_angstrom.



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# File 'lib/rafflesia/artifacts/mrc_header_metadata.rb', line 34

def voxel_size_angstrom
  @voxel_size_angstrom
end