Class: Rafflesia::MmseqSearchRequest

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/sequences/mmseq_search_request.rb

Constant Summary collapse

HASH_ATTRS = 
{
  database: :database,
  dry_run: :dry_run,
  extra_args: :extra_args,
  manifest_object_id: :manifest_object_id,
  manifest_path: :manifest_path,
  max_seqs: :max_seqs,
  min_bits: :min_bits,
  output_dir: :output_dir,
  output_format: :output_format,
  output_relation: :output_relation,
  partition_by: :partition_by,
  preview_limit: :preview_limit,
  query: :query,
  relation: :relation,
  release: :release,
  sensitivity: :sensitivity,
  shards: :shards,
  sort_by: :sort_by,
  target: :target,
  target_dir: :target_dir,
  threads: :threads
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ MmseqSearchRequest

Returns a new instance of MmseqSearchRequest.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 55

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @database = hash[:database]
  @dry_run = hash[:dry_run]
  @extra_args = (hash[:extra_args] || [])
  @manifest_object_id = hash[:manifest_object_id]
  @manifest_path = hash[:manifest_path]
  @max_seqs = hash[:max_seqs]
  @min_bits = hash[:min_bits]
  @output_dir = hash[:output_dir]
  @output_format = hash[:output_format]
  @output_relation = hash[:output_relation]
  @partition_by = (hash[:partition_by] || [])
  @preview_limit = hash[:preview_limit]
  @query = hash[:query]
  @relation = hash[:relation]
  @release = hash[:release]
  @sensitivity = hash[:sensitivity]
  @shards = (hash[:shards] || [])
  @sort_by = (hash[:sort_by] || [])
  @target = hash[:target]
  @target_dir = hash[:target_dir]
  @threads = hash[:threads]
end

Instance Attribute Details

#database ⇒ Object

Returns the value of attribute database.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def database
  @database
end

#dry_run ⇒ Object

Returns the value of attribute dry_run.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def dry_run
  @dry_run
end

#extra_args ⇒ Object

Returns the value of attribute extra_args.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def extra_args
  @extra_args
end

#manifest_object_id ⇒ Object

Returns the value of attribute manifest_object_id.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def manifest_object_id
  @manifest_object_id
end

#manifest_path ⇒ Object

Returns the value of attribute manifest_path.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def manifest_path
  @manifest_path
end

#max_seqs ⇒ Object

Returns the value of attribute max_seqs.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def max_seqs
  @max_seqs
end

#min_bits ⇒ Object

Returns the value of attribute min_bits.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def min_bits
  @min_bits
end

#output_dir ⇒ Object

Returns the value of attribute output_dir.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def output_dir
  @output_dir
end

#output_format ⇒ Object

Returns the value of attribute output_format.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def output_format
  @output_format
end

#output_relation ⇒ Object

Returns the value of attribute output_relation.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def output_relation
  @output_relation
end

#partition_by ⇒ Object

Returns the value of attribute partition_by.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def partition_by
  @partition_by
end

#preview_limit ⇒ Object

Returns the value of attribute preview_limit.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def preview_limit
  @preview_limit
end

#query ⇒ Object

Returns the value of attribute query.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def query
  @query
end

#relation ⇒ Object

Returns the value of attribute relation.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def relation
  @relation
end

#release ⇒ Object

Returns the value of attribute release.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def release
  @release
end

#sensitivity ⇒ Object

Returns the value of attribute sensitivity.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def sensitivity
  @sensitivity
end

#shards ⇒ Object

Returns the value of attribute shards.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def shards
  @shards
end

#sort_by ⇒ Object

Returns the value of attribute sort_by.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def sort_by
  @sort_by
end

#target ⇒ Object

Returns the value of attribute target.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def target
  @target
end

#target_dir ⇒ Object

Returns the value of attribute target_dir.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def target_dir
  @target_dir
end

#threads ⇒ Object

Returns the value of attribute threads.



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# File 'lib/rafflesia/sequences/mmseq_search_request.rb', line 32

def threads
  @threads
end