Class: Rafflesia::MapModelFitCandidateMeasurements

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/maps/map_model_fit_candidate_measurements.rb

Constant Summary collapse

HASH_ATTRS = 
{
  adjacent_copy_atom_clash_count: :adjacent_copy_atom_clash_count,
  adjacent_copy_atom_clash_fraction: :adjacent_copy_atom_clash_fraction,
  adjacent_copy_atom_pair_count: :adjacent_copy_atom_pair_count,
  atom_above_threshold_count: :atom_above_threshold_count,
  atom_above_threshold_fraction: :atom_above_threshold_fraction,
  copy_mean_density_z_stddev: :copy_mean_density_z_stddev,
  copy_mean_sampled_density_z: :copy_mean_sampled_density_z,
  density_threshold: :density_threshold,
  density_threshold_source: :density_threshold_source,
  expected_sample_count: :expected_sample_count,
  geometry_probe_score: :geometry_probe_score,
  mean_copy_above_threshold_fraction: :mean_copy_above_threshold_fraction,
  mean_copy_mean_density_z: :mean_copy_mean_density_z,
  mean_sampled_density: :mean_sampled_density,
  mean_sampled_density_z: :mean_sampled_density_z,
  minimum_adjacent_copy_atom_distance_angstrom: :minimum_adjacent_copy_atom_distance_angstrom,
  minimum_copy_above_threshold_fraction: :minimum_copy_above_threshold_fraction,
  minimum_copy_mean_density_z: :minimum_copy_mean_density_z,
  minimum_copy_sample_fraction: :minimum_copy_sample_fraction,
  objective: :objective,
  outside_map_fraction: :outside_map_fraction,
  sample_fraction: :sample_fraction,
  sampled_atom_count: :sampled_atom_count,
  sampled_atom_name: :sampled_atom_name
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ MapModelFitCandidateMeasurements

Returns a new instance of MapModelFitCandidateMeasurements.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 61

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @adjacent_copy_atom_clash_count = hash[:adjacent_copy_atom_clash_count]
  @adjacent_copy_atom_clash_fraction = hash[:adjacent_copy_atom_clash_fraction]
  @adjacent_copy_atom_pair_count = hash[:adjacent_copy_atom_pair_count]
  @atom_above_threshold_count = hash[:atom_above_threshold_count]
  @atom_above_threshold_fraction = hash[:atom_above_threshold_fraction]
  @copy_mean_density_z_stddev = hash[:copy_mean_density_z_stddev]
  @copy_mean_sampled_density_z = (hash[:copy_mean_sampled_density_z] || [])
  @density_threshold = hash[:density_threshold]
  @density_threshold_source = hash[:density_threshold_source]
  @expected_sample_count = hash[:expected_sample_count]
  @geometry_probe_score = hash[:geometry_probe_score]
  @mean_copy_above_threshold_fraction = hash[:mean_copy_above_threshold_fraction]
  @mean_copy_mean_density_z = hash[:mean_copy_mean_density_z]
  @mean_sampled_density = hash[:mean_sampled_density]
  @mean_sampled_density_z = hash[:mean_sampled_density_z]
  @minimum_adjacent_copy_atom_distance_angstrom = hash[:minimum_adjacent_copy_atom_distance_angstrom]
  @minimum_copy_above_threshold_fraction = hash[:minimum_copy_above_threshold_fraction]
  @minimum_copy_mean_density_z = hash[:minimum_copy_mean_density_z]
  @minimum_copy_sample_fraction = hash[:minimum_copy_sample_fraction]
  @objective = hash[:objective]
  @outside_map_fraction = hash[:outside_map_fraction]
  @sample_fraction = hash[:sample_fraction]
  @sampled_atom_count = hash[:sampled_atom_count]
  @sampled_atom_name = hash[:sampled_atom_name]
end

Instance Attribute Details

#adjacent_copy_atom_clash_count ⇒ Object

Returns the value of attribute adjacent_copy_atom_clash_count.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def adjacent_copy_atom_clash_count
  @adjacent_copy_atom_clash_count
end

#adjacent_copy_atom_clash_fraction ⇒ Object

Returns the value of attribute adjacent_copy_atom_clash_fraction.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def adjacent_copy_atom_clash_fraction
  @adjacent_copy_atom_clash_fraction
end

#adjacent_copy_atom_pair_count ⇒ Object

Returns the value of attribute adjacent_copy_atom_pair_count.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def adjacent_copy_atom_pair_count
  @adjacent_copy_atom_pair_count
end

#atom_above_threshold_count ⇒ Object

Returns the value of attribute atom_above_threshold_count.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def atom_above_threshold_count
  @atom_above_threshold_count
end

#atom_above_threshold_fraction ⇒ Object

Returns the value of attribute atom_above_threshold_fraction.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def atom_above_threshold_fraction
  @atom_above_threshold_fraction
end

#copy_mean_density_z_stddev ⇒ Object

Returns the value of attribute copy_mean_density_z_stddev.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def copy_mean_density_z_stddev
  @copy_mean_density_z_stddev
end

#copy_mean_sampled_density_z ⇒ Object

Returns the value of attribute copy_mean_sampled_density_z.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def copy_mean_sampled_density_z
  @copy_mean_sampled_density_z
end

#density_threshold ⇒ Object

Returns the value of attribute density_threshold.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def density_threshold
  @density_threshold
end

#density_threshold_source ⇒ Object

Returns the value of attribute density_threshold_source.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def density_threshold_source
  @density_threshold_source
end

#expected_sample_count ⇒ Object

Returns the value of attribute expected_sample_count.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def expected_sample_count
  @expected_sample_count
end

#geometry_probe_score ⇒ Object

Returns the value of attribute geometry_probe_score.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def geometry_probe_score
  @geometry_probe_score
end

#mean_copy_above_threshold_fraction ⇒ Object

Returns the value of attribute mean_copy_above_threshold_fraction.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def mean_copy_above_threshold_fraction
  @mean_copy_above_threshold_fraction
end

#mean_copy_mean_density_z ⇒ Object

Returns the value of attribute mean_copy_mean_density_z.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def mean_copy_mean_density_z
  @mean_copy_mean_density_z
end

#mean_sampled_density ⇒ Object

Returns the value of attribute mean_sampled_density.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def mean_sampled_density
  @mean_sampled_density
end

#mean_sampled_density_z ⇒ Object

Returns the value of attribute mean_sampled_density_z.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def mean_sampled_density_z
  @mean_sampled_density_z
end

#minimum_adjacent_copy_atom_distance_angstrom ⇒ Object

Returns the value of attribute minimum_adjacent_copy_atom_distance_angstrom.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def minimum_adjacent_copy_atom_distance_angstrom
  @minimum_adjacent_copy_atom_distance_angstrom
end

#minimum_copy_above_threshold_fraction ⇒ Object

Returns the value of attribute minimum_copy_above_threshold_fraction.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def minimum_copy_above_threshold_fraction
  @minimum_copy_above_threshold_fraction
end

#minimum_copy_mean_density_z ⇒ Object

Returns the value of attribute minimum_copy_mean_density_z.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def minimum_copy_mean_density_z
  @minimum_copy_mean_density_z
end

#minimum_copy_sample_fraction ⇒ Object

Returns the value of attribute minimum_copy_sample_fraction.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def minimum_copy_sample_fraction
  @minimum_copy_sample_fraction
end

#objective ⇒ Object

Returns the value of attribute objective.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def objective
  @objective
end

#outside_map_fraction ⇒ Object

Returns the value of attribute outside_map_fraction.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def outside_map_fraction
  @outside_map_fraction
end

#sample_fraction ⇒ Object

Returns the value of attribute sample_fraction.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def sample_fraction
  @sample_fraction
end

#sampled_atom_count ⇒ Object

Returns the value of attribute sampled_atom_count.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def sampled_atom_count
  @sampled_atom_count
end

#sampled_atom_name ⇒ Object

Returns the value of attribute sampled_atom_name.



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# File 'lib/rafflesia/maps/map_model_fit_candidate_measurements.rb', line 35

def sampled_atom_name
  @sampled_atom_name
end