Class: Rafflesia::LigandCompareData

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/proteins/ligand_compare_data.rb

Constant Summary collapse

HASH_ATTRS = 
{
  backend: :backend,
  contact_f1: :contact_f_1,
  contact_precision: :contact_precision,
  contact_recall: :contact_recall,
  is_ligand_rmsd_available: :is_ligand_rmsd_available,
  is_query_ligand_filtered: :is_query_ligand_filtered,
  is_target_ligand_filtered: :is_target_ligand_filtered,
  ligand_rmsd_angstrom: :ligand_rmsd_angstrom,
  matched_ligand_atom_count: :matched_ligand_atom_count,
  method: :method,
  query_contact_count: :query_contact_count,
  query_ligand_count: :query_ligand_count,
  query_ligand_ids: :query_ligand_ids,
  query_only_contact_count: :query_only_contact_count,
  query_only_contact_residue_keys: :query_only_contact_residue_keys,
  query_structure_id: :query_structure_id,
  radius: :radius,
  shared_contact_count: :shared_contact_count,
  shared_contact_residue_keys: :shared_contact_residue_keys,
  target_contact_count: :target_contact_count,
  target_ligand_count: :target_ligand_count,
  target_ligand_ids: :target_ligand_ids,
  target_only_contact_count: :target_only_contact_count,
  target_only_contact_residue_keys: :target_only_contact_residue_keys,
  target_structure_id: :target_structure_id
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ LigandCompareData

Returns a new instance of LigandCompareData.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 63

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @backend = hash[:backend]
  @contact_f_1 = hash[:contact_f1]
  @contact_precision = hash[:contact_precision]
  @contact_recall = hash[:contact_recall]
  @is_ligand_rmsd_available = hash[:is_ligand_rmsd_available]
  @is_query_ligand_filtered = hash[:is_query_ligand_filtered]
  @is_target_ligand_filtered = hash[:is_target_ligand_filtered]
  @ligand_rmsd_angstrom = hash[:ligand_rmsd_angstrom]
  @matched_ligand_atom_count = hash[:matched_ligand_atom_count]
  @method = hash[:method]
  @query_contact_count = hash[:query_contact_count]
  @query_ligand_count = hash[:query_ligand_count]
  @query_ligand_ids = (hash[:query_ligand_ids] || [])
  @query_only_contact_count = hash[:query_only_contact_count]
  @query_only_contact_residue_keys = (hash[:query_only_contact_residue_keys] || [])
  @query_structure_id = hash[:query_structure_id]
  @radius = hash[:radius]
  @shared_contact_count = hash[:shared_contact_count]
  @shared_contact_residue_keys = (hash[:shared_contact_residue_keys] || [])
  @target_contact_count = hash[:target_contact_count]
  @target_ligand_count = hash[:target_ligand_count]
  @target_ligand_ids = (hash[:target_ligand_ids] || [])
  @target_only_contact_count = hash[:target_only_contact_count]
  @target_only_contact_residue_keys = (hash[:target_only_contact_residue_keys] || [])
  @target_structure_id = hash[:target_structure_id]
end

Instance Attribute Details

#backend ⇒ Object

Returns the value of attribute backend.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def backend
  @backend
end

#contact_f_1 ⇒ Object

Returns the value of attribute contact_f_1.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def contact_f_1
  @contact_f_1
end

#contact_precision ⇒ Object

Returns the value of attribute contact_precision.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def contact_precision
  @contact_precision
end

#contact_recall ⇒ Object

Returns the value of attribute contact_recall.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def contact_recall
  @contact_recall
end

#is_ligand_rmsd_available ⇒ Object

Returns the value of attribute is_ligand_rmsd_available.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def is_ligand_rmsd_available
  @is_ligand_rmsd_available
end

#is_query_ligand_filtered ⇒ Object

Returns the value of attribute is_query_ligand_filtered.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def is_query_ligand_filtered
  @is_query_ligand_filtered
end

#is_target_ligand_filtered ⇒ Object

Returns the value of attribute is_target_ligand_filtered.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def is_target_ligand_filtered
  @is_target_ligand_filtered
end

#ligand_rmsd_angstrom ⇒ Object

Returns the value of attribute ligand_rmsd_angstrom.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def ligand_rmsd_angstrom
  @ligand_rmsd_angstrom
end

#matched_ligand_atom_count ⇒ Object

Returns the value of attribute matched_ligand_atom_count.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def matched_ligand_atom_count
  @matched_ligand_atom_count
end

#method ⇒ Object

Returns the value of attribute method.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def method
  @method
end

#query_contact_count ⇒ Object

Returns the value of attribute query_contact_count.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def query_contact_count
  @query_contact_count
end

#query_ligand_count ⇒ Object

Returns the value of attribute query_ligand_count.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def query_ligand_count
  @query_ligand_count
end

#query_ligand_ids ⇒ Object

Returns the value of attribute query_ligand_ids.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def query_ligand_ids
  @query_ligand_ids
end

#query_only_contact_count ⇒ Object

Returns the value of attribute query_only_contact_count.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def query_only_contact_count
  @query_only_contact_count
end

#query_only_contact_residue_keys ⇒ Object

Returns the value of attribute query_only_contact_residue_keys.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def query_only_contact_residue_keys
  @query_only_contact_residue_keys
end

#query_structure_id ⇒ Object

Returns the value of attribute query_structure_id.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def query_structure_id
  @query_structure_id
end

#radius ⇒ Object

Returns the value of attribute radius.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def radius
  @radius
end

#shared_contact_count ⇒ Object

Returns the value of attribute shared_contact_count.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def shared_contact_count
  @shared_contact_count
end

#shared_contact_residue_keys ⇒ Object

Returns the value of attribute shared_contact_residue_keys.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def shared_contact_residue_keys
  @shared_contact_residue_keys
end

#target_contact_count ⇒ Object

Returns the value of attribute target_contact_count.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def target_contact_count
  @target_contact_count
end

#target_ligand_count ⇒ Object

Returns the value of attribute target_ligand_count.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def target_ligand_count
  @target_ligand_count
end

#target_ligand_ids ⇒ Object

Returns the value of attribute target_ligand_ids.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def target_ligand_ids
  @target_ligand_ids
end

#target_only_contact_count ⇒ Object

Returns the value of attribute target_only_contact_count.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def target_only_contact_count
  @target_only_contact_count
end

#target_only_contact_residue_keys ⇒ Object

Returns the value of attribute target_only_contact_residue_keys.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def target_only_contact_residue_keys
  @target_only_contact_residue_keys
end

#target_structure_id ⇒ Object

Returns the value of attribute target_structure_id.



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# File 'lib/rafflesia/proteins/ligand_compare_data.rb', line 36

def target_structure_id
  @target_structure_id
end