Class: Rafflesia::InterfaceFeature

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/proteins/interface_feature.rb

Constant Summary collapse

HASH_ATTRS = 
{
  assembly_id: :assembly_id,
  buried_surface_area_angstrom2: :buried_surface_area_angstrom_2,
  chain_a_id: :chain_a_id,
  chain_b_id: :chain_b_id,
  contact_pair_count: :contact_pair_count,
  contact_pairs: :contact_pairs,
  has_buried_surface_area: :has_buried_surface_area,
  has_pae: :has_pae,
  has_plddt: :has_plddt,
  interface_id: :interface_id,
  interface_mean_pae: :interface_mean_pae,
  interface_plddt: :interface_plddt,
  is_contact_pairs_truncated: :is_contact_pairs_truncated,
  mean_distance_angstrom: :mean_distance_angstrom,
  method: :method,
  min_distance_angstrom: :min_distance_angstrom,
  model_id: :model_id,
  radius: :radius,
  region_ids: :region_ids,
  residue_contacts_a: :residue_contacts_a,
  residue_contacts_b: :residue_contacts_b,
  residue_count_a: :residue_count_a,
  residue_count_b: :residue_count_b,
  residues_a: :residues_a,
  residues_b: :residues_b,
  structure_id: :structure_id
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ InterfaceFeature

Returns a new instance of InterfaceFeature.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 65

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @assembly_id = hash[:assembly_id]
  @buried_surface_area_angstrom_2 = hash[:buried_surface_area_angstrom2]
  @chain_a_id = hash[:chain_a_id]
  @chain_b_id = hash[:chain_b_id]
  @contact_pair_count = hash[:contact_pair_count]
  @contact_pairs = (hash[:contact_pairs] || []).map { |item| item ? Rafflesia::ContactPair.new(item) : nil }
  @has_buried_surface_area = hash[:has_buried_surface_area]
  @has_pae = hash[:has_pae]
  @has_plddt = hash[:has_plddt]
  @interface_id = hash[:interface_id]
  @interface_mean_pae = hash[:interface_mean_pae]
  @interface_plddt = hash[:interface_plddt]
  @is_contact_pairs_truncated = hash[:is_contact_pairs_truncated]
  @mean_distance_angstrom = hash[:mean_distance_angstrom]
  @method = hash[:method]
  @min_distance_angstrom = hash[:min_distance_angstrom]
  @model_id = hash[:model_id]
  @radius = hash[:radius]
  @region_ids = (hash[:region_ids] || [])
  @residue_contacts_a = (hash[:residue_contacts_a] || []).map { |item| item ? Rafflesia::InterfaceResidueContact.new(item) : nil }
  @residue_contacts_b = (hash[:residue_contacts_b] || []).map { |item| item ? Rafflesia::InterfaceResidueContact.new(item) : nil }
  @residue_count_a = hash[:residue_count_a]
  @residue_count_b = hash[:residue_count_b]
  @residues_a = (hash[:residues_a] || []).map { |item| item ? Rafflesia::ResiduePointer.new(item) : nil }
  @residues_b = (hash[:residues_b] || []).map { |item| item ? Rafflesia::ResiduePointer.new(item) : nil }
  @structure_id = hash[:structure_id]
end

Instance Attribute Details

#assembly_id ⇒ Object

Returns the value of attribute assembly_id.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def assembly_id
  @assembly_id
end

#buried_surface_area_angstrom_2 ⇒ Object

Returns the value of attribute buried_surface_area_angstrom_2.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def buried_surface_area_angstrom_2
  @buried_surface_area_angstrom_2
end

#chain_a_id ⇒ Object

Returns the value of attribute chain_a_id.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def chain_a_id
  @chain_a_id
end

#chain_b_id ⇒ Object

Returns the value of attribute chain_b_id.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def chain_b_id
  @chain_b_id
end

#contact_pair_count ⇒ Object

Returns the value of attribute contact_pair_count.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def contact_pair_count
  @contact_pair_count
end

#contact_pairs ⇒ Object

Returns the value of attribute contact_pairs.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def contact_pairs
  @contact_pairs
end

#has_buried_surface_area ⇒ Object

Returns the value of attribute has_buried_surface_area.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def has_buried_surface_area
  @has_buried_surface_area
end

#has_pae ⇒ Object

Returns the value of attribute has_pae.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def has_pae
  @has_pae
end

#has_plddt ⇒ Object

Returns the value of attribute has_plddt.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def has_plddt
  @has_plddt
end

#interface_id ⇒ Object

Returns the value of attribute interface_id.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def interface_id
  @interface_id
end

#interface_mean_pae ⇒ Object

Returns the value of attribute interface_mean_pae.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def interface_mean_pae
  @interface_mean_pae
end

#interface_plddt ⇒ Object

Returns the value of attribute interface_plddt.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def interface_plddt
  @interface_plddt
end

#is_contact_pairs_truncated ⇒ Object

Returns the value of attribute is_contact_pairs_truncated.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def is_contact_pairs_truncated
  @is_contact_pairs_truncated
end

#mean_distance_angstrom ⇒ Object

Returns the value of attribute mean_distance_angstrom.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def mean_distance_angstrom
  @mean_distance_angstrom
end

#method ⇒ Object

Returns the value of attribute method.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def method
  @method
end

#min_distance_angstrom ⇒ Object

Returns the value of attribute min_distance_angstrom.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def min_distance_angstrom
  @min_distance_angstrom
end

#model_id ⇒ Object

Returns the value of attribute model_id.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def model_id
  @model_id
end

#radius ⇒ Object

Returns the value of attribute radius.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def radius
  @radius
end

#region_ids ⇒ Object

Returns the value of attribute region_ids.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def region_ids
  @region_ids
end

#residue_contacts_a ⇒ Object

Returns the value of attribute residue_contacts_a.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def residue_contacts_a
  @residue_contacts_a
end

#residue_contacts_b ⇒ Object

Returns the value of attribute residue_contacts_b.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def residue_contacts_b
  @residue_contacts_b
end

#residue_count_a ⇒ Object

Returns the value of attribute residue_count_a.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def residue_count_a
  @residue_count_a
end

#residue_count_b ⇒ Object

Returns the value of attribute residue_count_b.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def residue_count_b
  @residue_count_b
end

#residues_a ⇒ Object

Returns the value of attribute residues_a.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def residues_a
  @residues_a
end

#residues_b ⇒ Object

Returns the value of attribute residues_b.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def residues_b
  @residues_b
end

#structure_id ⇒ Object

Returns the value of attribute structure_id.



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# File 'lib/rafflesia/proteins/interface_feature.rb', line 37

def structure_id
  @structure_id
end