Class: Rafflesia::InterfaceDetectRequest

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/proteins/interface_detect_request.rb

Constant Summary collapse

HASH_ATTRS = 
{
  database: :database,
  include_pairs: :include_pairs,
  include_residue_contacts: :include_residue_contacts,
  include_same_chain: :include_same_chain,
  include_waters: :include_waters,
  max_interfaces: :max_interfaces,
  max_pairs: :max_pairs,
  method: :method,
  min_sequence_separation: :min_sequence_separation,
  output_format: :output_format,
  output_relation: :output_relation,
  partition_by: :partition_by,
  preview_limit: :preview_limit,
  radius: :radius,
  relation: :relation,
  release: :release,
  residues: :residues,
  residues_require_both: :residues_require_both,
  sort_by: :sort_by,
  structure_id: :structure_id
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ InterfaceDetectRequest

Returns a new instance of InterfaceDetectRequest.



53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 53

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @database = hash[:database]
  @include_pairs = hash[:include_pairs]
  @include_residue_contacts = hash[:include_residue_contacts]
  @include_same_chain = hash[:include_same_chain]
  @include_waters = hash[:include_waters]
  @max_interfaces = hash[:max_interfaces]
  @max_pairs = hash[:max_pairs]
  @method = hash[:method]
  @min_sequence_separation = hash[:min_sequence_separation]
  @output_format = hash[:output_format]
  @output_relation = hash[:output_relation]
  @partition_by = (hash[:partition_by] || [])
  @preview_limit = hash[:preview_limit]
  @radius = hash[:radius]
  @relation = hash[:relation]
  @release = hash[:release]
  @residues = (hash[:residues] || [])
  @residues_require_both = hash[:residues_require_both]
  @sort_by = (hash[:sort_by] || [])
  @structure_id = hash[:structure_id]
end

Instance Attribute Details

#database ⇒ Object

Returns the value of attribute database.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def database
  @database
end

#include_pairs ⇒ Object

Returns the value of attribute include_pairs.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def include_pairs
  @include_pairs
end

#include_residue_contacts ⇒ Object

Returns the value of attribute include_residue_contacts.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def include_residue_contacts
  @include_residue_contacts
end

#include_same_chain ⇒ Object

Returns the value of attribute include_same_chain.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def include_same_chain
  @include_same_chain
end

#include_waters ⇒ Object

Returns the value of attribute include_waters.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def include_waters
  @include_waters
end

#max_interfaces ⇒ Object

Returns the value of attribute max_interfaces.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def max_interfaces
  @max_interfaces
end

#max_pairs ⇒ Object

Returns the value of attribute max_pairs.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def max_pairs
  @max_pairs
end

#method ⇒ Object

Returns the value of attribute method.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def method
  @method
end

#min_sequence_separation ⇒ Object

Returns the value of attribute min_sequence_separation.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def min_sequence_separation
  @min_sequence_separation
end

#output_format ⇒ Object

Returns the value of attribute output_format.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def output_format
  @output_format
end

#output_relation ⇒ Object

Returns the value of attribute output_relation.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def output_relation
  @output_relation
end

#partition_by ⇒ Object

Returns the value of attribute partition_by.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def partition_by
  @partition_by
end

#preview_limit ⇒ Object

Returns the value of attribute preview_limit.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def preview_limit
  @preview_limit
end

#radius ⇒ Object

Returns the value of attribute radius.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def radius
  @radius
end

#relation ⇒ Object

Returns the value of attribute relation.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def relation
  @relation
end

#release ⇒ Object

Returns the value of attribute release.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def release
  @release
end

#residues ⇒ Object

Returns the value of attribute residues.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def residues
  @residues
end

#residues_require_both ⇒ Object

Returns the value of attribute residues_require_both.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def residues_require_both
  @residues_require_both
end

#sort_by ⇒ Object

Returns the value of attribute sort_by.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def sort_by
  @sort_by
end

#structure_id ⇒ Object

Returns the value of attribute structure_id.



31
32
33
 
# File 'lib/rafflesia/proteins/interface_detect_request.rb', line 31

def structure_id
  @structure_id
end