Class: Rafflesia::FoldHit

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/proteins/fold_hit.rb

Constant Summary collapse

HASH_ATTRS = 
{
  aligned_residues: :aligned_residues,
  alignment_object_id: :alignment_object_id,
  atom_count_delta: :atom_count_delta,
  backend: :backend,
  bits: :bits,
  chain_count_delta: :chain_count_delta,
  evalue: :evalue,
  geometry_overlap: :geometry_overlap,
  hit_id: :hit_id,
  lddt: :lddt,
  length_similarity: :length_similarity,
  probability: :probability,
  query_coverage: :query_coverage,
  query_id: :query_id,
  query_tm_score: :query_tm_score,
  residue_count_delta: :residue_count_delta,
  rmsd_angstrom: :rmsd_angstrom,
  sequence_identity: :sequence_identity,
  shard_id: :shard_id,
  target_coverage: :target_coverage,
  target_id: :target_id,
  target_tm_score: :target_tm_score,
  tm_score: :tm_score
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ FoldHit

Returns a new instance of FoldHit.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 59

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @aligned_residues = hash[:aligned_residues]
  @alignment_object_id = hash[:alignment_object_id]
  @atom_count_delta = hash[:atom_count_delta]
  @backend = hash[:backend]
  @bits = hash[:bits]
  @chain_count_delta = hash[:chain_count_delta]
  @evalue = hash[:evalue]
  @geometry_overlap = hash[:geometry_overlap]
  @hit_id = hash[:hit_id]
  @lddt = hash[:lddt]
  @length_similarity = hash[:length_similarity]
  @probability = hash[:probability]
  @query_coverage = hash[:query_coverage]
  @query_id = hash[:query_id]
  @query_tm_score = hash[:query_tm_score]
  @residue_count_delta = hash[:residue_count_delta]
  @rmsd_angstrom = hash[:rmsd_angstrom]
  @sequence_identity = hash[:sequence_identity]
  @shard_id = hash[:shard_id]
  @target_coverage = hash[:target_coverage]
  @target_id = hash[:target_id]
  @target_tm_score = hash[:target_tm_score]
  @tm_score = hash[:tm_score]
end

Instance Attribute Details

#aligned_residues ⇒ Object

Returns the value of attribute aligned_residues.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def aligned_residues
  @aligned_residues
end

#alignment_object_id ⇒ Object

Returns the value of attribute alignment_object_id.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def alignment_object_id
  @alignment_object_id
end

#atom_count_delta ⇒ Object

Returns the value of attribute atom_count_delta.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def atom_count_delta
  @atom_count_delta
end

#backend ⇒ Object

Returns the value of attribute backend.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def backend
  @backend
end

#bits ⇒ Object

Returns the value of attribute bits.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def bits
  @bits
end

#chain_count_delta ⇒ Object

Returns the value of attribute chain_count_delta.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def chain_count_delta
  @chain_count_delta
end

#evalue ⇒ Object

Returns the value of attribute evalue.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def evalue
  @evalue
end

#geometry_overlap ⇒ Object

Returns the value of attribute geometry_overlap.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def geometry_overlap
  @geometry_overlap
end

#hit_id ⇒ Object

Returns the value of attribute hit_id.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def hit_id
  @hit_id
end

#lddt ⇒ Object

Returns the value of attribute lddt.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def lddt
  @lddt
end

#length_similarity ⇒ Object

Returns the value of attribute length_similarity.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def length_similarity
  @length_similarity
end

#probability ⇒ Object

Returns the value of attribute probability.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def probability
  @probability
end

#query_coverage ⇒ Object

Returns the value of attribute query_coverage.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def query_coverage
  @query_coverage
end

#query_id ⇒ Object

Returns the value of attribute query_id.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def query_id
  @query_id
end

#query_tm_score ⇒ Object

Returns the value of attribute query_tm_score.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def query_tm_score
  @query_tm_score
end

#residue_count_delta ⇒ Object

Returns the value of attribute residue_count_delta.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def residue_count_delta
  @residue_count_delta
end

#rmsd_angstrom ⇒ Object

Returns the value of attribute rmsd_angstrom.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def rmsd_angstrom
  @rmsd_angstrom
end

#sequence_identity ⇒ Object

Returns the value of attribute sequence_identity.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def sequence_identity
  @sequence_identity
end

#shard_id ⇒ Object

Returns the value of attribute shard_id.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def shard_id
  @shard_id
end

#target_coverage ⇒ Object

Returns the value of attribute target_coverage.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def target_coverage
  @target_coverage
end

#target_id ⇒ Object

Returns the value of attribute target_id.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def target_id
  @target_id
end

#target_tm_score ⇒ Object

Returns the value of attribute target_tm_score.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def target_tm_score
  @target_tm_score
end

#tm_score ⇒ Object

Returns the value of attribute tm_score.



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# File 'lib/rafflesia/proteins/fold_hit.rb', line 34

def tm_score
  @tm_score
end