Class: Rafflesia::DiamondSearchRequest

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/sequences/diamond_search_request.rb

Constant Summary collapse

HASH_ATTRS = 
{
  database: :database,
  db: :db,
  dry_run: :dry_run,
  evalue: :evalue,
  extra_args: :extra_args,
  manifest_path: :manifest_path,
  materialize: :materialize,
  max_target_seqs: :max_target_seqs,
  min_bit_score: :min_bit_score,
  out_format: :out_format,
  output_dir: :output_dir,
  output_format: :output_format,
  output_relation: :output_relation,
  partition_by: :partition_by,
  preview_limit: :preview_limit,
  program: :program,
  query: :query,
  query_gencode: :query_gencode,
  relation: :relation,
  release: :release,
  sort_by: :sort_by,
  target_dir: :target_dir,
  threads: :threads
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ DiamondSearchRequest

Returns a new instance of DiamondSearchRequest.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 59

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @database = hash[:database]
  @db = hash[:db]
  @dry_run = hash[:dry_run]
  @evalue = hash[:evalue]
  @extra_args = (hash[:extra_args] || [])
  @manifest_path = hash[:manifest_path]
  @materialize = hash[:materialize]
  @max_target_seqs = hash[:max_target_seqs]
  @min_bit_score = hash[:min_bit_score]
  @out_format = hash[:out_format]
  @output_dir = hash[:output_dir]
  @output_format = hash[:output_format]
  @output_relation = hash[:output_relation]
  @partition_by = (hash[:partition_by] || [])
  @preview_limit = hash[:preview_limit]
  @program = hash[:program]
  @query = hash[:query]
  @query_gencode = hash[:query_gencode]
  @relation = hash[:relation]
  @release = hash[:release]
  @sort_by = (hash[:sort_by] || [])
  @target_dir = hash[:target_dir]
  @threads = hash[:threads]
end

Instance Attribute Details

#database ⇒ Object

Returns the value of attribute database.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def database
  @database
end

#db ⇒ Object

Returns the value of attribute db.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def db
  @db
end

#dry_run ⇒ Object

Returns the value of attribute dry_run.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def dry_run
  @dry_run
end

#evalue ⇒ Object

Returns the value of attribute evalue.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def evalue
  @evalue
end

#extra_args ⇒ Object

Returns the value of attribute extra_args.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def extra_args
  @extra_args
end

#manifest_path ⇒ Object

Returns the value of attribute manifest_path.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def manifest_path
  @manifest_path
end

#materialize ⇒ Object

Returns the value of attribute materialize.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def materialize
  @materialize
end

#max_target_seqs ⇒ Object

Returns the value of attribute max_target_seqs.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def max_target_seqs
  @max_target_seqs
end

#min_bit_score ⇒ Object

Returns the value of attribute min_bit_score.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def min_bit_score
  @min_bit_score
end

#out_format ⇒ Object

Returns the value of attribute out_format.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def out_format
  @out_format
end

#output_dir ⇒ Object

Returns the value of attribute output_dir.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def output_dir
  @output_dir
end

#output_format ⇒ Object

Returns the value of attribute output_format.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def output_format
  @output_format
end

#output_relation ⇒ Object

Returns the value of attribute output_relation.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def output_relation
  @output_relation
end

#partition_by ⇒ Object

Returns the value of attribute partition_by.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def partition_by
  @partition_by
end

#preview_limit ⇒ Object

Returns the value of attribute preview_limit.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def preview_limit
  @preview_limit
end

#program ⇒ Object

Returns the value of attribute program.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def program
  @program
end

#query ⇒ Object

Returns the value of attribute query.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def query
  @query
end

#query_gencode ⇒ Object

Returns the value of attribute query_gencode.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def query_gencode
  @query_gencode
end

#relation ⇒ Object

Returns the value of attribute relation.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def relation
  @relation
end

#release ⇒ Object

Returns the value of attribute release.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def release
  @release
end

#sort_by ⇒ Object

Returns the value of attribute sort_by.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def sort_by
  @sort_by
end

#target_dir ⇒ Object

Returns the value of attribute target_dir.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def target_dir
  @target_dir
end

#threads ⇒ Object

Returns the value of attribute threads.



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# File 'lib/rafflesia/sequences/diamond_search_request.rb', line 34

def threads
  @threads
end