Class: Rafflesia::CorpuReleaseBenchmarkRequest

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/datasets/corpu_release_benchmark_request.rb

Constant Summary collapse

HASH_ATTRS = 
{
  calibrated_query_profiles_path: :calibrated_query_profiles_path,
  calibrated_sequence_planner_mode: :calibrated_sequence_planner_mode,
  candidate_rank_strategy: :candidate_rank_strategy,
  corpus: :corpus,
  exact_rerank: :exact_rerank,
  exact_rerank_backend: :exact_rerank_backend,
  exact_rerank_rank_key: :exact_rerank_rank_key,
  family: :family,
  foldseek_binary_path: :foldseek_binary_path,
  input_path: :input_path,
  kmer_size: :kmer_size,
  max_bytes_per_query: :max_bytes_per_query,
  max_bytes_per_query_increase: :max_bytes_per_query_increase,
  max_candidates: :max_candidates,
  max_candidates_grid: :max_candidates_grid,
  max_final_recall_regression: :max_final_recall_regression,
  max_hits: :max_hits,
  max_latency_ms: :max_latency_ms,
  max_latency_ms_increase: :max_latency_ms_increase,
  max_object_bytes_total: :max_object_bytes_total,
  max_object_reads_increase: :max_object_reads_increase,
  max_object_reads_per_query: :max_object_reads_per_query,
  max_object_reads_total: :max_object_reads_total,
  max_postings_per_block: :max_postings_per_block,
  max_query_posting_blocks: :max_query_posting_blocks,
  max_query_posting_blocks_grid: :max_query_posting_blocks_grid,
  max_shards: :max_shards,
  max_shards_grid: :max_shards_grid,
  max_token_frequency: :max_token_frequency,
  max_verifications: :max_verifications,
  max_verifications_grid: :max_verifications_grid,
  min_candidate_pool_recall: :min_candidate_pool_recall,
  min_final_recall_at_k: :min_final_recall_at_k,
  min_hit_rate_at_k: :min_hit_rate_at_k,
  min_mean_recall_at_k: :min_mean_recall_at_k,
  minimizer_window: :minimizer_window,
  object_store_root: :object_store_root,
  payload_records_per_block: :payload_records_per_block,
  planner_delta_artifact_path: :planner_delta_artifact_path,
  postings_range_coalesce_gap_bytes: :postings_range_coalesce_gap_bytes,
  postings_range_coalesce_gap_bytes_grid: :postings_range_coalesce_gap_bytes_grid,
  postings_range_coalesce_max_span_bytes: :postings_range_coalesce_max_span_bytes,
  postings_range_coalesce_max_span_bytes_grid: :postings_range_coalesce_max_span_bytes_grid,
  previous_query_profile_audit_path: :previous_query_profile_audit_path,
  queries_jsonl_path: :queries_jsonl_path,
  query_mode: :query_mode,
  query_profile_audit_engine: :query_profile_audit_engine,
  query_profile_audit_limit: :query_profile_audit_limit,
  query_profile_audit_output_dir: :query_profile_audit_output_dir,
  query_profile_audit_timeout_ms: :query_profile_audit_timeout_ms,
  query_profile_audit_write_markdown: :query_profile_audit_write_markdown,
  query_profile_max_result_set_ids: :query_profile_max_result_set_ids,
  query_profiles_path: :query_profiles_path,
  release_prefix: :release_prefix,
  rerank_limit: :rerank_limit,
  routing_mode: :routing_mode,
  routing_mode_grid: :routing_mode_grid,
  routing_shard_count: :routing_shard_count,
  routing_shard_layout: :routing_shard_layout,
  run_planner_calibration_loop: :run_planner_calibration_loop,
  run_structure_pair_geometry_ab: :run_structure_pair_geometry_ab,
  sequence_planner_calibration_output_path: :sequence_planner_calibration_output_path,
  sequence_planner_calibration_path: :sequence_planner_calibration_path,
  sequence_planner_mode: :sequence_planner_mode,
  similar_kmer_max_variants: :similar_kmer_max_variants,
  similar_kmer_threshold: :similar_kmer_threshold,
  simulated_read_latency_ms: :simulated_read_latency_ms,
  structure_coordinate_paths: :structure_coordinate_paths,
  structure_gram_size: :structure_gram_size,
  structure_pair_geometry_evidence_jsonl_path: :structure_pair_geometry_evidence_jsonl_path,
  structure_pair_geometry_evidence_tsv_path: :structure_pair_geometry_evidence_tsv_path,
  structure_pair_geometry_max_query_tokens: :structure_pair_geometry_max_query_tokens,
  structure_pair_geometry_min_shared_pairs: :structure_pair_geometry_min_shared_pairs,
  structure_pair_geometry_shift_bins: :structure_pair_geometry_shift_bins,
  structure_pair_geometry_summary_path: :structure_pair_geometry_summary_path,
  structure_search_preset: :structure_search_preset,
  structure_token_extractor: :structure_token_extractor,
  structure_tokens_path: :structure_tokens_path,
  target_shard_score_coverage: :target_shard_score_coverage,
  target_shard_score_coverage_grid: :target_shard_score_coverage_grid,
  tmalign_binary_path: :tmalign_binary_path,
  ungapped_diagonal_top_n: :ungapped_diagonal_top_n,
  use_structure_pair_geometry: :use_structure_pair_geometry,
  verification_band: :verification_band
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ CorpuReleaseBenchmarkRequest

Returns a new instance of CorpuReleaseBenchmarkRequest.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 181

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @calibrated_query_profiles_path = hash[:calibrated_query_profiles_path]
  @calibrated_sequence_planner_mode = hash[:calibrated_sequence_planner_mode]
  @candidate_rank_strategy = hash[:candidate_rank_strategy]
  @corpus = hash[:corpus]
  @exact_rerank = hash[:exact_rerank]
  @exact_rerank_backend = hash[:exact_rerank_backend]
  @exact_rerank_rank_key = hash[:exact_rerank_rank_key]
  @family = hash[:family]
  @foldseek_binary_path = hash[:foldseek_binary_path]
  @input_path = hash[:input_path]
  @kmer_size = hash[:kmer_size]
  @max_bytes_per_query = hash[:max_bytes_per_query]
  @max_bytes_per_query_increase = hash[:max_bytes_per_query_increase]
  @max_candidates = hash[:max_candidates]
  @max_candidates_grid = (hash[:max_candidates_grid] || [])
  @max_final_recall_regression = hash[:max_final_recall_regression]
  @max_hits = hash[:max_hits]
  @max_latency_ms = hash[:max_latency_ms]
  @max_latency_ms_increase = hash[:max_latency_ms_increase]
  @max_object_bytes_total = hash[:max_object_bytes_total]
  @max_object_reads_increase = hash[:max_object_reads_increase]
  @max_object_reads_per_query = hash[:max_object_reads_per_query]
  @max_object_reads_total = hash[:max_object_reads_total]
  @max_postings_per_block = (hash[:max_postings_per_block] || [])
  @max_query_posting_blocks = hash[:max_query_posting_blocks]
  @max_query_posting_blocks_grid = (hash[:max_query_posting_blocks_grid] || [])
  @max_shards = hash[:max_shards]
  @max_shards_grid = (hash[:max_shards_grid] || [])
  @max_token_frequency = (hash[:max_token_frequency] || [])
  @max_verifications = hash[:max_verifications]
  @max_verifications_grid = (hash[:max_verifications_grid] || [])
  @min_candidate_pool_recall = hash[:min_candidate_pool_recall]
  @min_final_recall_at_k = hash[:min_final_recall_at_k]
  @min_hit_rate_at_k = hash[:min_hit_rate_at_k]
  @min_mean_recall_at_k = hash[:min_mean_recall_at_k]
  @minimizer_window = hash[:minimizer_window]
  @object_store_root = hash[:object_store_root]
  @payload_records_per_block = (hash[:payload_records_per_block] || [])
  @planner_delta_artifact_path = hash[:planner_delta_artifact_path]
  @postings_range_coalesce_gap_bytes = hash[:postings_range_coalesce_gap_bytes]
  @postings_range_coalesce_gap_bytes_grid = (hash[:postings_range_coalesce_gap_bytes_grid] || [])
  @postings_range_coalesce_max_span_bytes = hash[:postings_range_coalesce_max_span_bytes]
  @postings_range_coalesce_max_span_bytes_grid = (hash[:postings_range_coalesce_max_span_bytes_grid] || [])
  @previous_query_profile_audit_path = hash[:previous_query_profile_audit_path]
  @queries_jsonl_path = hash[:queries_jsonl_path]
  @query_mode = hash[:query_mode]
  @query_profile_audit_engine = hash[:query_profile_audit_engine]
  @query_profile_audit_limit = hash[:query_profile_audit_limit]
  @query_profile_audit_output_dir = hash[:query_profile_audit_output_dir]
  @query_profile_audit_timeout_ms = hash[:query_profile_audit_timeout_ms]
  @query_profile_audit_write_markdown = hash[:query_profile_audit_write_markdown]
  @query_profile_max_result_set_ids = hash[:query_profile_max_result_set_ids]
  @query_profiles_path = hash[:query_profiles_path]
  @release_prefix = hash[:release_prefix]
  @rerank_limit = hash[:rerank_limit]
  @routing_mode = hash[:routing_mode]
  @routing_mode_grid = (hash[:routing_mode_grid] || [])
  @routing_shard_count = (hash[:routing_shard_count] || [])
  @routing_shard_layout = (hash[:routing_shard_layout] || [])
  @run_planner_calibration_loop = hash[:run_planner_calibration_loop]
  @run_structure_pair_geometry_ab = hash[:run_structure_pair_geometry_ab]
  @sequence_planner_calibration_output_path = hash[:sequence_planner_calibration_output_path]
  @sequence_planner_calibration_path = hash[:sequence_planner_calibration_path]
  @sequence_planner_mode = hash[:sequence_planner_mode]
  @similar_kmer_max_variants = hash[:similar_kmer_max_variants]
  @similar_kmer_threshold = hash[:similar_kmer_threshold]
  @simulated_read_latency_ms = hash[:simulated_read_latency_ms]
  @structure_coordinate_paths = hash[:structure_coordinate_paths] || {}
  @structure_gram_size = hash[:structure_gram_size]
  @structure_pair_geometry_evidence_jsonl_path = hash[:structure_pair_geometry_evidence_jsonl_path]
  @structure_pair_geometry_evidence_tsv_path = hash[:structure_pair_geometry_evidence_tsv_path]
  @structure_pair_geometry_max_query_tokens = hash[:structure_pair_geometry_max_query_tokens]
  @structure_pair_geometry_min_shared_pairs = hash[:structure_pair_geometry_min_shared_pairs]
  @structure_pair_geometry_shift_bins = hash[:structure_pair_geometry_shift_bins]
  @structure_pair_geometry_summary_path = hash[:structure_pair_geometry_summary_path]
  @structure_search_preset = hash[:structure_search_preset]
  @structure_token_extractor = hash[:structure_token_extractor]
  @structure_tokens_path = hash[:structure_tokens_path]
  @target_shard_score_coverage = hash[:target_shard_score_coverage]
  @target_shard_score_coverage_grid = (hash[:target_shard_score_coverage_grid] || [])
  @tmalign_binary_path = hash[:tmalign_binary_path]
  @ungapped_diagonal_top_n = hash[:ungapped_diagonal_top_n]
  @use_structure_pair_geometry = hash[:use_structure_pair_geometry]
  @verification_band = hash[:verification_band]
end

Instance Attribute Details

#calibrated_query_profiles_path ⇒ Object

Returns the value of attribute calibrated_query_profiles_path.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def calibrated_query_profiles_path
  @calibrated_query_profiles_path
end

#calibrated_sequence_planner_mode ⇒ Object

Returns the value of attribute calibrated_sequence_planner_mode.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def calibrated_sequence_planner_mode
  @calibrated_sequence_planner_mode
end

#candidate_rank_strategy ⇒ Object

Returns the value of attribute candidate_rank_strategy.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def candidate_rank_strategy
  @candidate_rank_strategy
end

#corpus ⇒ Object

Returns the value of attribute corpus.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def corpus
  @corpus
end

#exact_rerank ⇒ Object

Returns the value of attribute exact_rerank.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def exact_rerank
  @exact_rerank
end

#exact_rerank_backend ⇒ Object

Returns the value of attribute exact_rerank_backend.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def exact_rerank_backend
  @exact_rerank_backend
end

#exact_rerank_rank_key ⇒ Object

Returns the value of attribute exact_rerank_rank_key.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def exact_rerank_rank_key
  @exact_rerank_rank_key
end

#family ⇒ Object

Returns the value of attribute family.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def family
  @family
end

#foldseek_binary_path ⇒ Object

Returns the value of attribute foldseek_binary_path.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def foldseek_binary_path
  @foldseek_binary_path
end

#input_path ⇒ Object

Returns the value of attribute input_path.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def input_path
  @input_path
end

#kmer_size ⇒ Object

Returns the value of attribute kmer_size.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def kmer_size
  @kmer_size
end

#max_bytes_per_query ⇒ Object

Returns the value of attribute max_bytes_per_query.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_bytes_per_query
  @max_bytes_per_query
end

#max_bytes_per_query_increase ⇒ Object

Returns the value of attribute max_bytes_per_query_increase.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_bytes_per_query_increase
  @max_bytes_per_query_increase
end

#max_candidates ⇒ Object

Returns the value of attribute max_candidates.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_candidates
  @max_candidates
end

#max_candidates_grid ⇒ Object

Returns the value of attribute max_candidates_grid.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_candidates_grid
  @max_candidates_grid
end

#max_final_recall_regression ⇒ Object

Returns the value of attribute max_final_recall_regression.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_final_recall_regression
  @max_final_recall_regression
end

#max_hits ⇒ Object

Returns the value of attribute max_hits.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_hits
  @max_hits
end

#max_latency_ms ⇒ Object

Returns the value of attribute max_latency_ms.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_latency_ms
  @max_latency_ms
end

#max_latency_ms_increase ⇒ Object

Returns the value of attribute max_latency_ms_increase.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_latency_ms_increase
  @max_latency_ms_increase
end

#max_object_bytes_total ⇒ Object

Returns the value of attribute max_object_bytes_total.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_object_bytes_total
  @max_object_bytes_total
end

#max_object_reads_increase ⇒ Object

Returns the value of attribute max_object_reads_increase.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_object_reads_increase
  @max_object_reads_increase
end

#max_object_reads_per_query ⇒ Object

Returns the value of attribute max_object_reads_per_query.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_object_reads_per_query
  @max_object_reads_per_query
end

#max_object_reads_total ⇒ Object

Returns the value of attribute max_object_reads_total.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_object_reads_total
  @max_object_reads_total
end

#max_postings_per_block ⇒ Object

Returns the value of attribute max_postings_per_block.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_postings_per_block
  @max_postings_per_block
end

#max_query_posting_blocks ⇒ Object

Returns the value of attribute max_query_posting_blocks.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_query_posting_blocks
  @max_query_posting_blocks
end

#max_query_posting_blocks_grid ⇒ Object

Returns the value of attribute max_query_posting_blocks_grid.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_query_posting_blocks_grid
  @max_query_posting_blocks_grid
end

#max_shards ⇒ Object

Returns the value of attribute max_shards.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_shards
  @max_shards
end

#max_shards_grid ⇒ Object

Returns the value of attribute max_shards_grid.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_shards_grid
  @max_shards_grid
end

#max_token_frequency ⇒ Object

Returns the value of attribute max_token_frequency.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_token_frequency
  @max_token_frequency
end

#max_verifications ⇒ Object

Returns the value of attribute max_verifications.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_verifications
  @max_verifications
end

#max_verifications_grid ⇒ Object

Returns the value of attribute max_verifications_grid.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def max_verifications_grid
  @max_verifications_grid
end

#min_candidate_pool_recall ⇒ Object

Returns the value of attribute min_candidate_pool_recall.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def min_candidate_pool_recall
  @min_candidate_pool_recall
end

#min_final_recall_at_k ⇒ Object

Returns the value of attribute min_final_recall_at_k.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def min_final_recall_at_k
  @min_final_recall_at_k
end

#min_hit_rate_at_k ⇒ Object

Returns the value of attribute min_hit_rate_at_k.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def min_hit_rate_at_k
  @min_hit_rate_at_k
end

#min_mean_recall_at_k ⇒ Object

Returns the value of attribute min_mean_recall_at_k.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def min_mean_recall_at_k
  @min_mean_recall_at_k
end

#minimizer_window ⇒ Object

Returns the value of attribute minimizer_window.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def minimizer_window
  @minimizer_window
end

#object_store_root ⇒ Object

Returns the value of attribute object_store_root.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def object_store_root
  @object_store_root
end

#payload_records_per_block ⇒ Object

Returns the value of attribute payload_records_per_block.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def payload_records_per_block
  @payload_records_per_block
end

#planner_delta_artifact_path ⇒ Object

Returns the value of attribute planner_delta_artifact_path.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def planner_delta_artifact_path
  @planner_delta_artifact_path
end

#postings_range_coalesce_gap_bytes ⇒ Object

Returns the value of attribute postings_range_coalesce_gap_bytes.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def postings_range_coalesce_gap_bytes
  @postings_range_coalesce_gap_bytes
end

#postings_range_coalesce_gap_bytes_grid ⇒ Object

Returns the value of attribute postings_range_coalesce_gap_bytes_grid.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def postings_range_coalesce_gap_bytes_grid
  @postings_range_coalesce_gap_bytes_grid
end

#postings_range_coalesce_max_span_bytes ⇒ Object

Returns the value of attribute postings_range_coalesce_max_span_bytes.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def postings_range_coalesce_max_span_bytes
  @postings_range_coalesce_max_span_bytes
end

#postings_range_coalesce_max_span_bytes_grid ⇒ Object

Returns the value of attribute postings_range_coalesce_max_span_bytes_grid.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def postings_range_coalesce_max_span_bytes_grid
  @postings_range_coalesce_max_span_bytes_grid
end

#previous_query_profile_audit_path ⇒ Object

Returns the value of attribute previous_query_profile_audit_path.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def previous_query_profile_audit_path
  @previous_query_profile_audit_path
end

#queries_jsonl_path ⇒ Object

Returns the value of attribute queries_jsonl_path.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def queries_jsonl_path
  @queries_jsonl_path
end

#query_mode ⇒ Object

Returns the value of attribute query_mode.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def query_mode
  @query_mode
end

#query_profile_audit_engine ⇒ Object

Returns the value of attribute query_profile_audit_engine.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def query_profile_audit_engine
  @query_profile_audit_engine
end

#query_profile_audit_limit ⇒ Object

Returns the value of attribute query_profile_audit_limit.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def query_profile_audit_limit
  @query_profile_audit_limit
end

#query_profile_audit_output_dir ⇒ Object

Returns the value of attribute query_profile_audit_output_dir.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def query_profile_audit_output_dir
  @query_profile_audit_output_dir
end

#query_profile_audit_timeout_ms ⇒ Object

Returns the value of attribute query_profile_audit_timeout_ms.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def query_profile_audit_timeout_ms
  @query_profile_audit_timeout_ms
end

#query_profile_audit_write_markdown ⇒ Object

Returns the value of attribute query_profile_audit_write_markdown.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def query_profile_audit_write_markdown
  @query_profile_audit_write_markdown
end

#query_profile_max_result_set_ids ⇒ Object

Returns the value of attribute query_profile_max_result_set_ids.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def query_profile_max_result_set_ids
  @query_profile_max_result_set_ids
end

#query_profiles_path ⇒ Object

Returns the value of attribute query_profiles_path.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def query_profiles_path
  @query_profiles_path
end

#release_prefix ⇒ Object

Returns the value of attribute release_prefix.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def release_prefix
  @release_prefix
end

#rerank_limit ⇒ Object

Returns the value of attribute rerank_limit.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def rerank_limit
  @rerank_limit
end

#routing_mode ⇒ Object

Returns the value of attribute routing_mode.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def routing_mode
  @routing_mode
end

#routing_mode_grid ⇒ Object

Returns the value of attribute routing_mode_grid.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def routing_mode_grid
  @routing_mode_grid
end

#routing_shard_count ⇒ Object

Returns the value of attribute routing_shard_count.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def routing_shard_count
  @routing_shard_count
end

#routing_shard_layout ⇒ Object

Returns the value of attribute routing_shard_layout.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def routing_shard_layout
  @routing_shard_layout
end

#run_planner_calibration_loop ⇒ Object

Returns the value of attribute run_planner_calibration_loop.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def run_planner_calibration_loop
  @run_planner_calibration_loop
end

#run_structure_pair_geometry_ab ⇒ Object

Returns the value of attribute run_structure_pair_geometry_ab.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def run_structure_pair_geometry_ab
  @run_structure_pair_geometry_ab
end

#sequence_planner_calibration_output_path ⇒ Object

Returns the value of attribute sequence_planner_calibration_output_path.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def sequence_planner_calibration_output_path
  @sequence_planner_calibration_output_path
end

#sequence_planner_calibration_path ⇒ Object

Returns the value of attribute sequence_planner_calibration_path.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def sequence_planner_calibration_path
  @sequence_planner_calibration_path
end

#sequence_planner_mode ⇒ Object

Returns the value of attribute sequence_planner_mode.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def sequence_planner_mode
  @sequence_planner_mode
end

#similar_kmer_max_variants ⇒ Object

Returns the value of attribute similar_kmer_max_variants.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def similar_kmer_max_variants
  @similar_kmer_max_variants
end

#similar_kmer_threshold ⇒ Object

Returns the value of attribute similar_kmer_threshold.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def similar_kmer_threshold
  @similar_kmer_threshold
end

#simulated_read_latency_ms ⇒ Object

Returns the value of attribute simulated_read_latency_ms.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def simulated_read_latency_ms
  @simulated_read_latency_ms
end

#structure_coordinate_paths ⇒ Object

Returns the value of attribute structure_coordinate_paths.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def structure_coordinate_paths
  @structure_coordinate_paths
end

#structure_gram_size ⇒ Object

Returns the value of attribute structure_gram_size.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def structure_gram_size
  @structure_gram_size
end

#structure_pair_geometry_evidence_jsonl_path ⇒ Object

Returns the value of attribute structure_pair_geometry_evidence_jsonl_path.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def structure_pair_geometry_evidence_jsonl_path
  @structure_pair_geometry_evidence_jsonl_path
end

#structure_pair_geometry_evidence_tsv_path ⇒ Object

Returns the value of attribute structure_pair_geometry_evidence_tsv_path.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def structure_pair_geometry_evidence_tsv_path
  @structure_pair_geometry_evidence_tsv_path
end

#structure_pair_geometry_max_query_tokens ⇒ Object

Returns the value of attribute structure_pair_geometry_max_query_tokens.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def structure_pair_geometry_max_query_tokens
  @structure_pair_geometry_max_query_tokens
end

#structure_pair_geometry_min_shared_pairs ⇒ Object

Returns the value of attribute structure_pair_geometry_min_shared_pairs.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def structure_pair_geometry_min_shared_pairs
  @structure_pair_geometry_min_shared_pairs
end

#structure_pair_geometry_shift_bins ⇒ Object

Returns the value of attribute structure_pair_geometry_shift_bins.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def structure_pair_geometry_shift_bins
  @structure_pair_geometry_shift_bins
end

#structure_pair_geometry_summary_path ⇒ Object

Returns the value of attribute structure_pair_geometry_summary_path.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def structure_pair_geometry_summary_path
  @structure_pair_geometry_summary_path
end

#structure_search_preset ⇒ Object

Returns the value of attribute structure_search_preset.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def structure_search_preset
  @structure_search_preset
end

#structure_token_extractor ⇒ Object

Returns the value of attribute structure_token_extractor.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def structure_token_extractor
  @structure_token_extractor
end

#structure_tokens_path ⇒ Object

Returns the value of attribute structure_tokens_path.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def structure_tokens_path
  @structure_tokens_path
end

#target_shard_score_coverage ⇒ Object

Returns the value of attribute target_shard_score_coverage.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def target_shard_score_coverage
  @target_shard_score_coverage
end

#target_shard_score_coverage_grid ⇒ Object

Returns the value of attribute target_shard_score_coverage_grid.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def target_shard_score_coverage_grid
  @target_shard_score_coverage_grid
end

#tmalign_binary_path ⇒ Object

Returns the value of attribute tmalign_binary_path.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def tmalign_binary_path
  @tmalign_binary_path
end

#ungapped_diagonal_top_n ⇒ Object

Returns the value of attribute ungapped_diagonal_top_n.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def ungapped_diagonal_top_n
  @ungapped_diagonal_top_n
end

#use_structure_pair_geometry ⇒ Object

Returns the value of attribute use_structure_pair_geometry.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def use_structure_pair_geometry
  @use_structure_pair_geometry
end

#verification_band ⇒ Object

Returns the value of attribute verification_band.



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# File 'lib/rafflesia/datasets/corpu_release_benchmark_request.rb', line 95

def verification_band
  @verification_band
end