Class: Rafflesia::ConfidenceSummaryData

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/proteins/confidence_summary_data.rb

Constant Summary collapse

HASH_ATTRS = 
{
  bins: :bins,
  confidence_metric: :confidence_metric,
  has_plddt_like_b_factor: :has_plddt_like_b_factor,
  low_confidence_count: :low_confidence_count,
  low_confidence_runs: :low_confidence_runs,
  mean_confidence_value: :mean_confidence_value,
  mean_plddt: :mean_plddt,
  median_confidence_value: :median_confidence_value,
  median_plddt: :median_plddt,
  relation: :relation,
  residue_count: :residue_count,
  residues: :residues,
  structure_id: :structure_id,
  threshold: :threshold
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ ConfidenceSummaryData

Returns a new instance of ConfidenceSummaryData.



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# File 'lib/rafflesia/proteins/confidence_summary_data.rb', line 41

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @bins = (hash[:bins] || []).map { |item| item ? Rafflesia::ConfidenceBin.new(item) : nil }
  @confidence_metric = hash[:confidence_metric]
  @has_plddt_like_b_factor = hash[:has_plddt_like_b_factor]
  @low_confidence_count = hash[:low_confidence_count]
  @low_confidence_runs = (hash[:low_confidence_runs] || []).map { |item| item ? Rafflesia::ResidueInterval.new(item) : nil }
  @mean_confidence_value = hash[:mean_confidence_value]
  @mean_plddt = hash[:mean_plddt]
  @median_confidence_value = hash[:median_confidence_value]
  @median_plddt = hash[:median_plddt]
  @relation = hash[:relation] ? Rafflesia::RelationArtifactData.new(hash[:relation]) : nil
  @residue_count = hash[:residue_count]
  @residues = (hash[:residues] || []).map { |item| item ? Rafflesia::ResidueConfidence.new(item) : nil }
  @structure_id = hash[:structure_id]
  @threshold = hash[:threshold]
end

Instance Attribute Details

#bins ⇒ Object

Returns the value of attribute bins.



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# File 'lib/rafflesia/proteins/confidence_summary_data.rb', line 25

def bins
  @bins
end

#confidence_metric ⇒ Object

Returns the value of attribute confidence_metric.



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# File 'lib/rafflesia/proteins/confidence_summary_data.rb', line 25

def confidence_metric
  @confidence_metric
end

#has_plddt_like_b_factor ⇒ Object

Returns the value of attribute has_plddt_like_b_factor.



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# File 'lib/rafflesia/proteins/confidence_summary_data.rb', line 25

def has_plddt_like_b_factor
  @has_plddt_like_b_factor
end

#low_confidence_count ⇒ Object

Returns the value of attribute low_confidence_count.



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# File 'lib/rafflesia/proteins/confidence_summary_data.rb', line 25

def low_confidence_count
  @low_confidence_count
end

#low_confidence_runs ⇒ Object

Returns the value of attribute low_confidence_runs.



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# File 'lib/rafflesia/proteins/confidence_summary_data.rb', line 25

def low_confidence_runs
  @low_confidence_runs
end

#mean_confidence_value ⇒ Object

Returns the value of attribute mean_confidence_value.



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# File 'lib/rafflesia/proteins/confidence_summary_data.rb', line 25

def mean_confidence_value
  @mean_confidence_value
end

#mean_plddt ⇒ Object

Returns the value of attribute mean_plddt.



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# File 'lib/rafflesia/proteins/confidence_summary_data.rb', line 25

def mean_plddt
  @mean_plddt
end

#median_confidence_value ⇒ Object

Returns the value of attribute median_confidence_value.



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# File 'lib/rafflesia/proteins/confidence_summary_data.rb', line 25

def median_confidence_value
  @median_confidence_value
end

#median_plddt ⇒ Object

Returns the value of attribute median_plddt.



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# File 'lib/rafflesia/proteins/confidence_summary_data.rb', line 25

def median_plddt
  @median_plddt
end

#relation ⇒ Object

Returns the value of attribute relation.



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# File 'lib/rafflesia/proteins/confidence_summary_data.rb', line 25

def relation
  @relation
end

#residue_count ⇒ Object

Returns the value of attribute residue_count.



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# File 'lib/rafflesia/proteins/confidence_summary_data.rb', line 25

def residue_count
  @residue_count
end

#residues ⇒ Object

Returns the value of attribute residues.



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# File 'lib/rafflesia/proteins/confidence_summary_data.rb', line 25

def residues
  @residues
end

#structure_id ⇒ Object

Returns the value of attribute structure_id.



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# File 'lib/rafflesia/proteins/confidence_summary_data.rb', line 25

def structure_id
  @structure_id
end

#threshold ⇒ Object

Returns the value of attribute threshold.



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# File 'lib/rafflesia/proteins/confidence_summary_data.rb', line 25

def threshold
  @threshold
end