Class: Rafflesia::BlastSearchRoutingData

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/sequences/blast_search_routing_data.rb

Constant Summary collapse

HASH_ATTRS = 
{
  candidate_count: :candidate_count,
  candidate_fasta_bytes: :candidate_fasta_bytes,
  candidate_fasta_path: :candidate_fasta_path,
  candidate_ids: :candidate_ids,
  candidate_oids: :candidate_oids,
  candidate_oids_bytes: :candidate_oids_bytes,
  candidate_oids_path: :candidate_oids_path,
  candidate_pack_bytes: :candidate_pack_bytes,
  candidate_pack_prefix: :candidate_pack_prefix,
  exact_pack_object_bytes: :exact_pack_object_bytes,
  exact_pack_object_read_count: :exact_pack_object_read_count,
  exact_prefetch: :exact_prefetch,
  execution_mode: :execution_mode,
  index_id: :index_id,
  is_sequence_order_verified: :is_sequence_order_verified,
  local_control_bytes: :local_control_bytes,
  manifest_object_id: :manifest_object_id,
  materialized_candidate_bytes: :materialized_candidate_bytes,
  mode: :mode,
  pack_sequence_order_sha256: :pack_sequence_order_sha_256,
  returned_candidate_count: :returned_candidate_count,
  routing_object_bytes: :routing_object_bytes,
  routing_object_read_count: :routing_object_read_count,
  seed_index: :seed_index,
  seed_sequence_order_sha256: :seed_sequence_order_sha_256
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ BlastSearchRoutingData

Returns a new instance of BlastSearchRoutingData.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 63

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @candidate_count = hash[:candidate_count]
  @candidate_fasta_bytes = hash[:candidate_fasta_bytes]
  @candidate_fasta_path = hash[:candidate_fasta_path]
  @candidate_ids = (hash[:candidate_ids] || [])
  @candidate_oids = (hash[:candidate_oids] || [])
  @candidate_oids_bytes = hash[:candidate_oids_bytes]
  @candidate_oids_path = hash[:candidate_oids_path]
  @candidate_pack_bytes = hash[:candidate_pack_bytes]
  @candidate_pack_prefix = hash[:candidate_pack_prefix]
  @exact_pack_object_bytes = hash[:exact_pack_object_bytes]
  @exact_pack_object_read_count = hash[:exact_pack_object_read_count]
  @exact_prefetch = hash[:exact_prefetch] ? Rafflesia::BlastPackPrefetchData.new(hash[:exact_prefetch]) : nil
  @execution_mode = hash[:execution_mode]
  @index_id = hash[:index_id]
  @is_sequence_order_verified = hash[:is_sequence_order_verified]
  @local_control_bytes = hash[:local_control_bytes]
  @manifest_object_id = hash[:manifest_object_id]
  @materialized_candidate_bytes = hash[:materialized_candidate_bytes]
  @mode = hash[:mode]
  @pack_sequence_order_sha_256 = hash[:pack_sequence_order_sha256]
  @returned_candidate_count = hash[:returned_candidate_count]
  @routing_object_bytes = hash[:routing_object_bytes]
  @routing_object_read_count = hash[:routing_object_read_count]
  @seed_index = hash[:seed_index] ? Rafflesia::SequenceSeedIndexSearchMetrics.new(hash[:seed_index]) : nil
  @seed_sequence_order_sha_256 = hash[:seed_sequence_order_sha256]
end

Instance Attribute Details

#candidate_count ⇒ Object

Returns the value of attribute candidate_count.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def candidate_count
  @candidate_count
end

#candidate_fasta_bytes ⇒ Object

Returns the value of attribute candidate_fasta_bytes.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def candidate_fasta_bytes
  @candidate_fasta_bytes
end

#candidate_fasta_path ⇒ Object

Returns the value of attribute candidate_fasta_path.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def candidate_fasta_path
  @candidate_fasta_path
end

#candidate_ids ⇒ Object

Returns the value of attribute candidate_ids.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def candidate_ids
  @candidate_ids
end

#candidate_oids ⇒ Object

Returns the value of attribute candidate_oids.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def candidate_oids
  @candidate_oids
end

#candidate_oids_bytes ⇒ Object

Returns the value of attribute candidate_oids_bytes.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def candidate_oids_bytes
  @candidate_oids_bytes
end

#candidate_oids_path ⇒ Object

Returns the value of attribute candidate_oids_path.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def candidate_oids_path
  @candidate_oids_path
end

#candidate_pack_bytes ⇒ Object

Returns the value of attribute candidate_pack_bytes.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def candidate_pack_bytes
  @candidate_pack_bytes
end

#candidate_pack_prefix ⇒ Object

Returns the value of attribute candidate_pack_prefix.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def candidate_pack_prefix
  @candidate_pack_prefix
end

#exact_pack_object_bytes ⇒ Object

Returns the value of attribute exact_pack_object_bytes.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def exact_pack_object_bytes
  @exact_pack_object_bytes
end

#exact_pack_object_read_count ⇒ Object

Returns the value of attribute exact_pack_object_read_count.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def exact_pack_object_read_count
  @exact_pack_object_read_count
end

#exact_prefetch ⇒ Object

Returns the value of attribute exact_prefetch.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def exact_prefetch
  @exact_prefetch
end

#execution_mode ⇒ Object

Returns the value of attribute execution_mode.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def execution_mode
  @execution_mode
end

#index_id ⇒ Object

Returns the value of attribute index_id.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def index_id
  @index_id
end

#is_sequence_order_verified ⇒ Object

Returns the value of attribute is_sequence_order_verified.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def is_sequence_order_verified
  @is_sequence_order_verified
end

#local_control_bytes ⇒ Object

Returns the value of attribute local_control_bytes.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def local_control_bytes
  @local_control_bytes
end

#manifest_object_id ⇒ Object

Returns the value of attribute manifest_object_id.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def manifest_object_id
  @manifest_object_id
end

#materialized_candidate_bytes ⇒ Object

Returns the value of attribute materialized_candidate_bytes.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def materialized_candidate_bytes
  @materialized_candidate_bytes
end

#mode ⇒ Object

Returns the value of attribute mode.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def mode
  @mode
end

#pack_sequence_order_sha_256 ⇒ Object

Returns the value of attribute pack_sequence_order_sha_256.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def pack_sequence_order_sha_256
  @pack_sequence_order_sha_256
end

#returned_candidate_count ⇒ Object

Returns the value of attribute returned_candidate_count.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def returned_candidate_count
  @returned_candidate_count
end

#routing_object_bytes ⇒ Object

Returns the value of attribute routing_object_bytes.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def routing_object_bytes
  @routing_object_bytes
end

#routing_object_read_count ⇒ Object

Returns the value of attribute routing_object_read_count.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def routing_object_read_count
  @routing_object_read_count
end

#seed_index ⇒ Object

Returns the value of attribute seed_index.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def seed_index
  @seed_index
end

#seed_sequence_order_sha_256 ⇒ Object

Returns the value of attribute seed_sequence_order_sha_256.



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# File 'lib/rafflesia/sequences/blast_search_routing_data.rb', line 36

def seed_sequence_order_sha_256
  @seed_sequence_order_sha_256
end