Class: Rafflesia::BlastSearchRequest

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/sequences/blast_search_request.rb

Constant Summary collapse

HASH_ATTRS = 
{
  concurrency: :concurrency,
  database: :database,
  db: :db,
  db_refs: :db_refs,
  dry_run: :dry_run,
  evalue: :evalue,
  manifest_path: :manifest_path,
  materialize: :materialize,
  max_exact_shards: :max_exact_shards,
  max_materialized_bytes: :max_materialized_bytes,
  max_object_bytes: :max_object_bytes,
  max_object_reads: :max_object_reads,
  max_target_seqs: :max_target_seqs,
  min_bit_score: :min_bit_score,
  out_format: :out_format,
  output_dir: :output_dir,
  output_format: :output_format,
  output_relation: :output_relation,
  pack_access_mode: :pack_access_mode,
  partition_by: :partition_by,
  preview_limit: :preview_limit,
  profile: :profile,
  program: :program,
  query: :query,
  relation: :relation,
  release: :release,
  require_routing: :require_routing,
  require_zero_materialization: :require_zero_materialization,
  routing_concurrency: :routing_concurrency,
  routing_index_id: :routing_index_id,
  routing_kmer_size: :routing_kmer_size,
  routing_manifest_object_id: :routing_manifest_object_id,
  routing_manifest_path: :routing_manifest_path,
  routing_max_candidates: :routing_max_candidates,
  routing_min_identity: :routing_min_identity,
  routing_name: :routing_name,
  routing_rerank_alignment: :routing_rerank_alignment,
  routing_use_block_cache: :routing_use_block_cache,
  routing_version: :routing_version,
  routing_wal_object_ids: :routing_wal_object_ids,
  shard_ids: :shard_ids,
  sort_by: :sort_by,
  target_dir: :target_dir,
  task: :task,
  threads: :threads
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ BlastSearchRequest

Returns a new instance of BlastSearchRequest.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 103

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @concurrency = hash[:concurrency]
  @database = hash[:database]
  @db = hash[:db]
  @db_refs = (hash[:db_refs] || [])
  @dry_run = hash[:dry_run]
  @evalue = hash[:evalue]
  @manifest_path = hash[:manifest_path]
  @materialize = hash[:materialize]
  @max_exact_shards = hash[:max_exact_shards]
  @max_materialized_bytes = hash[:max_materialized_bytes]
  @max_object_bytes = hash[:max_object_bytes]
  @max_object_reads = hash[:max_object_reads]
  @max_target_seqs = hash[:max_target_seqs]
  @min_bit_score = hash[:min_bit_score]
  @out_format = hash[:out_format]
  @output_dir = hash[:output_dir]
  @output_format = hash[:output_format]
  @output_relation = hash[:output_relation]
  @pack_access_mode = hash[:pack_access_mode]
  @partition_by = (hash[:partition_by] || [])
  @preview_limit = hash[:preview_limit]
  @profile = hash[:profile]
  @program = hash[:program]
  @query = hash[:query]
  @relation = hash[:relation]
  @release = hash[:release]
  @require_routing = hash[:require_routing]
  @require_zero_materialization = hash[:require_zero_materialization]
  @routing_concurrency = hash[:routing_concurrency]
  @routing_index_id = hash[:routing_index_id]
  @routing_kmer_size = hash[:routing_kmer_size]
  @routing_manifest_object_id = hash[:routing_manifest_object_id]
  @routing_manifest_path = hash[:routing_manifest_path]
  @routing_max_candidates = hash[:routing_max_candidates]
  @routing_min_identity = hash[:routing_min_identity]
  @routing_name = hash[:routing_name]
  @routing_rerank_alignment = hash[:routing_rerank_alignment]
  @routing_use_block_cache = hash[:routing_use_block_cache]
  @routing_version = hash[:routing_version]
  @routing_wal_object_ids = (hash[:routing_wal_object_ids] || [])
  @shard_ids = (hash[:shard_ids] || [])
  @sort_by = (hash[:sort_by] || [])
  @target_dir = hash[:target_dir]
  @task = hash[:task]
  @threads = hash[:threads]
end

Instance Attribute Details

#concurrency ⇒ Object

Returns the value of attribute concurrency.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def concurrency
  @concurrency
end

#database ⇒ Object

Returns the value of attribute database.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def database
  @database
end

#db ⇒ Object

Returns the value of attribute db.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def db
  @db
end

#db_refs ⇒ Object

Returns the value of attribute db_refs.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def db_refs
  @db_refs
end

#dry_run ⇒ Object

Returns the value of attribute dry_run.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def dry_run
  @dry_run
end

#evalue ⇒ Object

Returns the value of attribute evalue.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def evalue
  @evalue
end

#manifest_path ⇒ Object

Returns the value of attribute manifest_path.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def manifest_path
  @manifest_path
end

#materialize ⇒ Object

Returns the value of attribute materialize.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def materialize
  @materialize
end

#max_exact_shards ⇒ Object

Returns the value of attribute max_exact_shards.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def max_exact_shards
  @max_exact_shards
end

#max_materialized_bytes ⇒ Object

Returns the value of attribute max_materialized_bytes.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def max_materialized_bytes
  @max_materialized_bytes
end

#max_object_bytes ⇒ Object

Returns the value of attribute max_object_bytes.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def max_object_bytes
  @max_object_bytes
end

#max_object_reads ⇒ Object

Returns the value of attribute max_object_reads.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def max_object_reads
  @max_object_reads
end

#max_target_seqs ⇒ Object

Returns the value of attribute max_target_seqs.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def max_target_seqs
  @max_target_seqs
end

#min_bit_score ⇒ Object

Returns the value of attribute min_bit_score.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def min_bit_score
  @min_bit_score
end

#out_format ⇒ Object

Returns the value of attribute out_format.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def out_format
  @out_format
end

#output_dir ⇒ Object

Returns the value of attribute output_dir.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def output_dir
  @output_dir
end

#output_format ⇒ Object

Returns the value of attribute output_format.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def output_format
  @output_format
end

#output_relation ⇒ Object

Returns the value of attribute output_relation.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def output_relation
  @output_relation
end

#pack_access_mode ⇒ Object

Returns the value of attribute pack_access_mode.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def pack_access_mode
  @pack_access_mode
end

#partition_by ⇒ Object

Returns the value of attribute partition_by.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def partition_by
  @partition_by
end

#preview_limit ⇒ Object

Returns the value of attribute preview_limit.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def preview_limit
  @preview_limit
end

#profile ⇒ Object

Returns the value of attribute profile.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def profile
  @profile
end

#program ⇒ Object

Returns the value of attribute program.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def program
  @program
end

#query ⇒ Object

Returns the value of attribute query.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def query
  @query
end

#relation ⇒ Object

Returns the value of attribute relation.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def relation
  @relation
end

#release ⇒ Object

Returns the value of attribute release.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def release
  @release
end

#require_routing ⇒ Object

Returns the value of attribute require_routing.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def require_routing
  @require_routing
end

#require_zero_materialization ⇒ Object

Returns the value of attribute require_zero_materialization.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def require_zero_materialization
  @require_zero_materialization
end

#routing_concurrency ⇒ Object

Returns the value of attribute routing_concurrency.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def routing_concurrency
  @routing_concurrency
end

#routing_index_id ⇒ Object

Returns the value of attribute routing_index_id.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def routing_index_id
  @routing_index_id
end

#routing_kmer_size ⇒ Object

Returns the value of attribute routing_kmer_size.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def routing_kmer_size
  @routing_kmer_size
end

#routing_manifest_object_id ⇒ Object

Returns the value of attribute routing_manifest_object_id.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def routing_manifest_object_id
  @routing_manifest_object_id
end

#routing_manifest_path ⇒ Object

Returns the value of attribute routing_manifest_path.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def routing_manifest_path
  @routing_manifest_path
end

#routing_max_candidates ⇒ Object

Returns the value of attribute routing_max_candidates.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def routing_max_candidates
  @routing_max_candidates
end

#routing_min_identity ⇒ Object

Returns the value of attribute routing_min_identity.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def routing_min_identity
  @routing_min_identity
end

#routing_name ⇒ Object

Returns the value of attribute routing_name.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def routing_name
  @routing_name
end

#routing_rerank_alignment ⇒ Object

Returns the value of attribute routing_rerank_alignment.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def routing_rerank_alignment
  @routing_rerank_alignment
end

#routing_use_block_cache ⇒ Object

Returns the value of attribute routing_use_block_cache.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def routing_use_block_cache
  @routing_use_block_cache
end

#routing_version ⇒ Object

Returns the value of attribute routing_version.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def routing_version
  @routing_version
end

#routing_wal_object_ids ⇒ Object

Returns the value of attribute routing_wal_object_ids.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def routing_wal_object_ids
  @routing_wal_object_ids
end

#shard_ids ⇒ Object

Returns the value of attribute shard_ids.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def shard_ids
  @shard_ids
end

#sort_by ⇒ Object

Returns the value of attribute sort_by.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def sort_by
  @sort_by
end

#target_dir ⇒ Object

Returns the value of attribute target_dir.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def target_dir
  @target_dir
end

#task ⇒ Object

Returns the value of attribute task.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def task
  @task
end

#threads ⇒ Object

Returns the value of attribute threads.



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# File 'lib/rafflesia/sequences/blast_search_request.rb', line 56

def threads
  @threads
end