Class: Rafflesia::BlastSearchBenchmarkRequest

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/sequences/blast_search_benchmark_request.rb

Constant Summary collapse

HASH_ATTRS = 
{
  db: :db,
  evalue: :evalue,
  manifest_path: :manifest_path,
  max_local_control_bytes: :max_local_control_bytes,
  max_object_bytes: :max_object_bytes,
  max_object_reads: :max_object_reads,
  max_target_seqs: :max_target_seqs,
  min_bit_score: :min_bit_score,
  min_byte_reduction_fraction: :min_byte_reduction_fraction,
  min_hit_overlap_fraction: :min_hit_overlap_fraction,
  min_recall_at_1: :min_recall_at_1,
  min_recall_at_10: :min_recall_at_10,
  output_dir: :output_dir,
  profile: :profile,
  program: :program,
  query: :query,
  require_exact_pack_reads: :require_exact_pack_reads,
  require_no_local_control_files: :require_no_local_control_files,
  require_zero_materialization: :require_zero_materialization,
  routing_concurrency: :routing_concurrency,
  routing_index_id: :routing_index_id,
  routing_kmer_size: :routing_kmer_size,
  routing_manifest_object_id: :routing_manifest_object_id,
  routing_manifest_path: :routing_manifest_path,
  routing_max_candidates: :routing_max_candidates,
  routing_min_identity: :routing_min_identity,
  routing_name: :routing_name,
  routing_rerank_alignment: :routing_rerank_alignment,
  routing_use_block_cache: :routing_use_block_cache,
  routing_version: :routing_version,
  store_artifact: :store_artifact,
  target_dir: :target_dir
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ BlastSearchBenchmarkRequest

Returns a new instance of BlastSearchBenchmarkRequest.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 77

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @db = hash[:db]
  @evalue = hash[:evalue]
  @manifest_path = hash[:manifest_path]
  @max_local_control_bytes = hash[:max_local_control_bytes]
  @max_object_bytes = hash[:max_object_bytes]
  @max_object_reads = hash[:max_object_reads]
  @max_target_seqs = hash[:max_target_seqs]
  @min_bit_score = hash[:min_bit_score]
  @min_byte_reduction_fraction = hash[:min_byte_reduction_fraction]
  @min_hit_overlap_fraction = hash[:min_hit_overlap_fraction]
  @min_recall_at_1 = hash[:min_recall_at_1]
  @min_recall_at_10 = hash[:min_recall_at_10]
  @output_dir = hash[:output_dir]
  @profile = hash[:profile]
  @program = hash[:program]
  @query = hash[:query]
  @require_exact_pack_reads = hash[:require_exact_pack_reads]
  @require_no_local_control_files = hash[:require_no_local_control_files]
  @require_zero_materialization = hash[:require_zero_materialization]
  @routing_concurrency = hash[:routing_concurrency]
  @routing_index_id = hash[:routing_index_id]
  @routing_kmer_size = hash[:routing_kmer_size]
  @routing_manifest_object_id = hash[:routing_manifest_object_id]
  @routing_manifest_path = hash[:routing_manifest_path]
  @routing_max_candidates = hash[:routing_max_candidates]
  @routing_min_identity = hash[:routing_min_identity]
  @routing_name = hash[:routing_name]
  @routing_rerank_alignment = hash[:routing_rerank_alignment]
  @routing_use_block_cache = hash[:routing_use_block_cache]
  @routing_version = hash[:routing_version]
  @store_artifact = hash[:store_artifact]
  @target_dir = hash[:target_dir]
end

Instance Attribute Details

#db ⇒ Object

Returns the value of attribute db.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def db
  @db
end

#evalue ⇒ Object

Returns the value of attribute evalue.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def evalue
  @evalue
end

#manifest_path ⇒ Object

Returns the value of attribute manifest_path.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def manifest_path
  @manifest_path
end

#max_local_control_bytes ⇒ Object

Returns the value of attribute max_local_control_bytes.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def max_local_control_bytes
  @max_local_control_bytes
end

#max_object_bytes ⇒ Object

Returns the value of attribute max_object_bytes.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def max_object_bytes
  @max_object_bytes
end

#max_object_reads ⇒ Object

Returns the value of attribute max_object_reads.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def max_object_reads
  @max_object_reads
end

#max_target_seqs ⇒ Object

Returns the value of attribute max_target_seqs.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def max_target_seqs
  @max_target_seqs
end

#min_bit_score ⇒ Object

Returns the value of attribute min_bit_score.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def min_bit_score
  @min_bit_score
end

#min_byte_reduction_fraction ⇒ Object

Returns the value of attribute min_byte_reduction_fraction.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def min_byte_reduction_fraction
  @min_byte_reduction_fraction
end

#min_hit_overlap_fraction ⇒ Object

Returns the value of attribute min_hit_overlap_fraction.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def min_hit_overlap_fraction
  @min_hit_overlap_fraction
end

#min_recall_at_1 ⇒ Object

Returns the value of attribute min_recall_at_1.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def min_recall_at_1
  @min_recall_at_1
end

#min_recall_at_10 ⇒ Object

Returns the value of attribute min_recall_at_10.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def min_recall_at_10
  @min_recall_at_10
end

#output_dir ⇒ Object

Returns the value of attribute output_dir.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def output_dir
  @output_dir
end

#profile ⇒ Object

Returns the value of attribute profile.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def profile
  @profile
end

#program ⇒ Object

Returns the value of attribute program.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def program
  @program
end

#query ⇒ Object

Returns the value of attribute query.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def query
  @query
end

#require_exact_pack_reads ⇒ Object

Returns the value of attribute require_exact_pack_reads.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def require_exact_pack_reads
  @require_exact_pack_reads
end

#require_no_local_control_files ⇒ Object

Returns the value of attribute require_no_local_control_files.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def require_no_local_control_files
  @require_no_local_control_files
end

#require_zero_materialization ⇒ Object

Returns the value of attribute require_zero_materialization.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def require_zero_materialization
  @require_zero_materialization
end

#routing_concurrency ⇒ Object

Returns the value of attribute routing_concurrency.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def routing_concurrency
  @routing_concurrency
end

#routing_index_id ⇒ Object

Returns the value of attribute routing_index_id.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def routing_index_id
  @routing_index_id
end

#routing_kmer_size ⇒ Object

Returns the value of attribute routing_kmer_size.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def routing_kmer_size
  @routing_kmer_size
end

#routing_manifest_object_id ⇒ Object

Returns the value of attribute routing_manifest_object_id.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def routing_manifest_object_id
  @routing_manifest_object_id
end

#routing_manifest_path ⇒ Object

Returns the value of attribute routing_manifest_path.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def routing_manifest_path
  @routing_manifest_path
end

#routing_max_candidates ⇒ Object

Returns the value of attribute routing_max_candidates.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def routing_max_candidates
  @routing_max_candidates
end

#routing_min_identity ⇒ Object

Returns the value of attribute routing_min_identity.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def routing_min_identity
  @routing_min_identity
end

#routing_name ⇒ Object

Returns the value of attribute routing_name.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def routing_name
  @routing_name
end

#routing_rerank_alignment ⇒ Object

Returns the value of attribute routing_rerank_alignment.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def routing_rerank_alignment
  @routing_rerank_alignment
end

#routing_use_block_cache ⇒ Object

Returns the value of attribute routing_use_block_cache.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def routing_use_block_cache
  @routing_use_block_cache
end

#routing_version ⇒ Object

Returns the value of attribute routing_version.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def routing_version
  @routing_version
end

#store_artifact ⇒ Object

Returns the value of attribute store_artifact.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def store_artifact
  @store_artifact
end

#target_dir ⇒ Object

Returns the value of attribute target_dir.



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# File 'lib/rafflesia/sequences/blast_search_benchmark_request.rb', line 43

def target_dir
  @target_dir
end