Class: Rafflesia::AnmFluctuationsData

Inherits:
Types::BaseModel
  • Object
show all
Defined in:
lib/rafflesia/proteins/anm_fluctuations_data.rb

Constant Summary collapse

HASH_ATTRS = 
{
  b_factor_correlation: :b_factor_correlation,
  chain: :chain,
  component_count: :component_count,
  contact_count: :contact_count,
  cutoff_angstrom: :cutoff_angstrom,
  modes: :modes,
  residue_count: :residue_count,
  residues: :residues,
  structure_id: :structure_id
}.freeze

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(json) ⇒ AnmFluctuationsData

Returns a new instance of AnmFluctuationsData.



31
32
33
34
35
36
37
38
39
40
41
42
43
 
# File 'lib/rafflesia/proteins/anm_fluctuations_data.rb', line 31

def initialize(json)
  super()
  hash = self.class.normalize(json)
  @b_factor_correlation = hash[:b_factor_correlation]
  @chain = hash[:chain]
  @component_count = hash[:component_count]
  @contact_count = hash[:contact_count]
  @cutoff_angstrom = hash[:cutoff_angstrom]
  @modes = (hash[:modes] || []).map { |item| item ? Rafflesia::AnmModeRecord.new(item) : nil }
  @residue_count = hash[:residue_count]
  @residues = (hash[:residues] || []).map { |item| item ? Rafflesia::AnmResidueFluctuation.new(item) : nil }
  @structure_id = hash[:structure_id]
end

Instance Attribute Details

#b_factor_correlation ⇒ Object

Returns the value of attribute b_factor_correlation.



20
21
22
 
# File 'lib/rafflesia/proteins/anm_fluctuations_data.rb', line 20

def b_factor_correlation
  @b_factor_correlation
end

#chain ⇒ Object

Returns the value of attribute chain.



20
21
22
 
# File 'lib/rafflesia/proteins/anm_fluctuations_data.rb', line 20

def chain
  @chain
end

#component_count ⇒ Object

Returns the value of attribute component_count.



20
21
22
 
# File 'lib/rafflesia/proteins/anm_fluctuations_data.rb', line 20

def component_count
  @component_count
end

#contact_count ⇒ Object

Returns the value of attribute contact_count.



20
21
22
 
# File 'lib/rafflesia/proteins/anm_fluctuations_data.rb', line 20

def contact_count
  @contact_count
end

#cutoff_angstrom ⇒ Object

Returns the value of attribute cutoff_angstrom.



20
21
22
 
# File 'lib/rafflesia/proteins/anm_fluctuations_data.rb', line 20

def cutoff_angstrom
  @cutoff_angstrom
end

#modes ⇒ Object

Returns the value of attribute modes.



20
21
22
 
# File 'lib/rafflesia/proteins/anm_fluctuations_data.rb', line 20

def modes
  @modes
end

#residue_count ⇒ Object

Returns the value of attribute residue_count.



20
21
22
 
# File 'lib/rafflesia/proteins/anm_fluctuations_data.rb', line 20

def residue_count
  @residue_count
end

#residues ⇒ Object

Returns the value of attribute residues.



20
21
22
 
# File 'lib/rafflesia/proteins/anm_fluctuations_data.rb', line 20

def residues
  @residues
end

#structure_id ⇒ Object

Returns the value of attribute structure_id.



20
21
22
 
# File 'lib/rafflesia/proteins/anm_fluctuations_data.rb', line 20

def structure_id
  @structure_id
end