Module: Dratools::DdbjRecordFields

Defined in:: lib/dratools/ddbj_record_fields.rb

Overview

DDBJ Search resource JSON で使う resource type とキー名をまとめる。

Constant Summary collapse

SRA_RUN_RESOURCE_TYPE =

'sra-run'

SRA_EXPERIMENT_RESOURCE_TYPE =

'sra-experiment'

SRA_SAMPLE_RESOURCE_TYPE =

'sra-sample'

SRA_STUDY_RESOURCE_TYPE =

'sra-study'

SRA_SUBMISSION_RESOURCE_TYPE =

'sra-submission'

BIOPROJECT_RESOURCE_TYPE =

'bioproject'

BIOSAMPLE_RESOURCE_TYPE =

'biosample'

FILE_TYPE_SRA =

'sra'

FILE_TYPE_FASTQ =

'fastq'

FILE_TYPE_ALL =

'all'

DB_XREFS_KEY =

'dbXrefs'

CHILD_BIOPROJECTS_KEY =

'childBioProjects'

TYPE_KEY =

'type'

URL_KEY =

'url'

FTP_URL_KEY =

'ftpUrl'

ID_KEY =

'id'

IDENTIFIER_KEY =

'identifier'

ACCESSION_KEY =

'accession'

PRIMARY_ID_KEY =

'primaryId'

DOWNLOAD_URL_KEY =

'downloadUrl'

DISTRIBUTION_KEY =

'distribution'

CONTENT_URL_KEY =

'contentUrl'

CONTENT_SIZE_KEY =

'contentSize'

SIZE_KEY =

'size'

FILE_SIZE_KEY =

'fileSize'

MD5_KEY =

'md5'

MD5_SUM_KEY =

'md5sum'

ENCODING_FORMAT_KEY =

'encodingFormat'

INFO_FIELD_KEYS =

[
  IDENTIFIER_KEY,
  TYPE_KEY,
  'title',
  'description',
  'organism',
  'platform',
  'instrumentModel',
  'libraryStrategy',
  'librarySource',
  'librarySelection',
  'libraryLayout',
  'libraryName',
  'dateCreated',
  'dateModified',
  'datePublished',
  'status'
].freeze