Class: Cheminee::DefaultApi

Inherits:
Object
  • Object
show all
Defined in:
lib/cheminee/api/default_api.rb

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(api_client = ApiClient.default) ⇒ DefaultApi

Returns a new instance of DefaultApi.



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# File 'lib/cheminee/api/default_api.rb', line 19

def initialize(api_client = ApiClient.default)
  @api_client = api_client
end

Instance Attribute Details

#api_client ⇒ Object

Returns the value of attribute api_client.



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# File 'lib/cheminee/api/default_api.rb', line 17

def api_client
  @api_client
end

Instance Method Details

#v1_indexes_get(opts = {}) ⇒ Array<IndexMeta>

List indexes

Parameters:

  • opts (Hash) (defaults to: {}) —

    the optional parameters

Returns:



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# File 'lib/cheminee/api/default_api.rb', line 25

def v1_indexes_get(opts = {})
  data, _status_code, _headers = v1_indexes_get_with_http_info(opts)
  data
end

#v1_indexes_get_with_http_info(opts = {}) ⇒ Array<(Array<IndexMeta>, Integer, Hash)>

List indexes

Parameters:

  • opts (Hash) (defaults to: {}) —

    the optional parameters

Returns:

  • (Array<(Array<IndexMeta>, Integer, Hash)>) —

    Array<IndexMeta> data, response status code and response headers



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# File 'lib/cheminee/api/default_api.rb', line 33

def v1_indexes_get_with_http_info(opts = {})
  if @api_client.config.debugging
    @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_get ...'
  end
  # resource path
  local_var_path = '/v1/indexes'

  # query parameters
  query_params = opts[:query_params] || {}

  # header parameters
  header_params = opts[:header_params] || {}
  # HTTP header 'Accept' (if needed)
  header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])

  # form parameters
  form_params = opts[:form_params] || {}

  # http body (model)
  post_body = opts[:debug_body]

  # return_type
  return_type = opts[:debug_return_type] || 'Array<IndexMeta>'

  # auth_names
  auth_names = opts[:debug_auth_names] || []

  new_options = opts.merge(
    :operation => :"DefaultApi.v1_indexes_get",
    :header_params => header_params,
    :query_params => query_params,
    :form_params => form_params,
    :body => post_body,
    :auth_names => auth_names,
    :return_type => return_type
  )

  data, status_code, headers = @api_client.call_api(:GET, local_var_path, new_options)
  if @api_client.config.debugging
    @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
  end
  return data, status_code, headers
end

#v1_indexes_index_bulk_index_post(index, bulk_request, opts = {}) ⇒ PostIndexBulkResponseOk

Index a list of SMILES and associated, free-form JSON attributes which are indexed and searchable

Parameters:

  • index (String)
  • bulk_request (BulkRequest)
  • opts (Hash) (defaults to: {}) —

    the optional parameters

Returns:



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# File 'lib/cheminee/api/default_api.rb', line 82

def v1_indexes_index_bulk_index_post(index, bulk_request, opts = {})
  data, _status_code, _headers = v1_indexes_index_bulk_index_post_with_http_info(index, bulk_request, opts)
  data
end

#v1_indexes_index_bulk_index_post_with_http_info(index, bulk_request, opts = {}) ⇒ Array<(PostIndexBulkResponseOk, Integer, Hash)>

Index a list of SMILES and associated, free-form JSON attributes which are indexed and searchable

Parameters:

  • index (String)
  • bulk_request (BulkRequest)
  • opts (Hash) (defaults to: {}) —

    the optional parameters

Returns:

  • (Array<(PostIndexBulkResponseOk, Integer, Hash)>) —

    PostIndexBulkResponseOk data, response status code and response headers



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# File 'lib/cheminee/api/default_api.rb', line 92

def v1_indexes_index_bulk_index_post_with_http_info(index, bulk_request, opts = {})
  if @api_client.config.debugging
    @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_bulk_index_post ...'
  end
  # verify the required parameter 'index' is set
  if @api_client.config.client_side_validation && index.nil?
    fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_bulk_index_post"
  end
  # verify the required parameter 'bulk_request' is set
  if @api_client.config.client_side_validation && bulk_request.nil?
    fail ArgumentError, "Missing the required parameter 'bulk_request' when calling DefaultApi.v1_indexes_index_bulk_index_post"
  end
  # resource path
  local_var_path = '/v1/indexes/{index}/bulk_index'.sub('{' + 'index' + '}', CGI.escape(index.to_s))

  # query parameters
  query_params = opts[:query_params] || {}

  # header parameters
  header_params = opts[:header_params] || {}
  # HTTP header 'Accept' (if needed)
  header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])
  # HTTP header 'Content-Type'
  content_type = @api_client.select_header_content_type(['application/json; charset=utf-8'])
  if !content_type.nil?
      header_params['Content-Type'] = content_type
  end

  # form parameters
  form_params = opts[:form_params] || {}

  # http body (model)
  post_body = opts[:debug_body] || @api_client.object_to_http_body(bulk_request)

  # return_type
  return_type = opts[:debug_return_type] || 'PostIndexBulkResponseOk'

  # auth_names
  auth_names = opts[:debug_auth_names] || []

  new_options = opts.merge(
    :operation => :"DefaultApi.v1_indexes_index_bulk_index_post",
    :header_params => header_params,
    :query_params => query_params,
    :form_params => form_params,
    :body => post_body,
    :auth_names => auth_names,
    :return_type => return_type
  )

  data, status_code, headers = @api_client.call_api(:POST, local_var_path, new_options)
  if @api_client.config.debugging
    @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_bulk_index_post\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
  end
  return data, status_code, headers
end

#v1_indexes_index_get(index, opts = {}) ⇒ IndexSchema

Get extended information about an index

Parameters:

  • index (String)
  • opts (Hash) (defaults to: {}) —

    the optional parameters

Returns:



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# File 'lib/cheminee/api/default_api.rb', line 153

def v1_indexes_index_get(index, opts = {})
  data, _status_code, _headers = v1_indexes_index_get_with_http_info(index, opts)
  data
end

#v1_indexes_index_get_with_http_info(index, opts = {}) ⇒ Array<(IndexSchema, Integer, Hash)>

Get extended information about an index

Parameters:

  • index (String)
  • opts (Hash) (defaults to: {}) —

    the optional parameters

Returns:

  • (Array<(IndexSchema, Integer, Hash)>) —

    IndexSchema data, response status code and response headers



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# File 'lib/cheminee/api/default_api.rb', line 162

def v1_indexes_index_get_with_http_info(index, opts = {})
  if @api_client.config.debugging
    @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_get ...'
  end
  # verify the required parameter 'index' is set
  if @api_client.config.client_side_validation && index.nil?
    fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_get"
  end
  # resource path
  local_var_path = '/v1/indexes/{index}'.sub('{' + 'index' + '}', CGI.escape(index.to_s))

  # query parameters
  query_params = opts[:query_params] || {}

  # header parameters
  header_params = opts[:header_params] || {}
  # HTTP header 'Accept' (if needed)
  header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])

  # form parameters
  form_params = opts[:form_params] || {}

  # http body (model)
  post_body = opts[:debug_body]

  # return_type
  return_type = opts[:debug_return_type] || 'IndexSchema'

  # auth_names
  auth_names = opts[:debug_auth_names] || []

  new_options = opts.merge(
    :operation => :"DefaultApi.v1_indexes_index_get",
    :header_params => header_params,
    :query_params => query_params,
    :form_params => form_params,
    :body => post_body,
    :auth_names => auth_names,
    :return_type => return_type
  )

  data, status_code, headers = @api_client.call_api(:GET, local_var_path, new_options)
  if @api_client.config.debugging
    @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
  end
  return data, status_code, headers
end

#v1_indexes_index_post(index, schema, opts = {}) ⇒ IndexMeta

Create an index

Parameters:

  • index (String)
  • schema (String)
  • opts (Hash) (defaults to: {}) —

    the optional parameters

Options Hash (opts):

  • :sort_by (String)

Returns:



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# File 'lib/cheminee/api/default_api.rb', line 216

def v1_indexes_index_post(index, schema, opts = {})
  data, _status_code, _headers = v1_indexes_index_post_with_http_info(index, schema, opts)
  data
end

#v1_indexes_index_post_with_http_info(index, schema, opts = {}) ⇒ Array<(IndexMeta, Integer, Hash)>

Create an index

Parameters:

  • index (String)
  • schema (String)
  • opts (Hash) (defaults to: {}) —

    the optional parameters

Options Hash (opts):

  • :sort_by (String)

Returns:

  • (Array<(IndexMeta, Integer, Hash)>) —

    IndexMeta data, response status code and response headers



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# File 'lib/cheminee/api/default_api.rb', line 227

def v1_indexes_index_post_with_http_info(index, schema, opts = {})
  if @api_client.config.debugging
    @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_post ...'
  end
  # verify the required parameter 'index' is set
  if @api_client.config.client_side_validation && index.nil?
    fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_post"
  end
  # verify the required parameter 'schema' is set
  if @api_client.config.client_side_validation && schema.nil?
    fail ArgumentError, "Missing the required parameter 'schema' when calling DefaultApi.v1_indexes_index_post"
  end
  # resource path
  local_var_path = '/v1/indexes/{index}'.sub('{' + 'index' + '}', CGI.escape(index.to_s))

  # query parameters
  query_params = opts[:query_params] || {}
  query_params[:'schema'] = schema
  query_params[:'sort_by'] = opts[:'sort_by'] if !opts[:'sort_by'].nil?

  # header parameters
  header_params = opts[:header_params] || {}
  # HTTP header 'Accept' (if needed)
  header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])

  # form parameters
  form_params = opts[:form_params] || {}

  # http body (model)
  post_body = opts[:debug_body]

  # return_type
  return_type = opts[:debug_return_type] || 'IndexMeta'

  # auth_names
  auth_names = opts[:debug_auth_names] || []

  new_options = opts.merge(
    :operation => :"DefaultApi.v1_indexes_index_post",
    :header_params => header_params,
    :query_params => query_params,
    :form_params => form_params,
    :body => post_body,
    :auth_names => auth_names,
    :return_type => return_type
  )

  data, status_code, headers = @api_client.call_api(:POST, local_var_path, new_options)
  if @api_client.config.debugging
    @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_post\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
  end
  return data, status_code, headers
end

#v1_indexes_index_search_basic_get(index, query, opts = {}) ⇒ Array<QuerySearchHit>

Perform basic query search against index

Parameters:

  • index (String)
  • query (String)
  • opts (Hash) (defaults to: {}) —

    the optional parameters

Options Hash (opts):

  • :limit (Integer)

Returns:



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# File 'lib/cheminee/api/default_api.rb', line 287

def v1_indexes_index_search_basic_get(index, query, opts = {})
  data, _status_code, _headers = v1_indexes_index_search_basic_get_with_http_info(index, query, opts)
  data
end

#v1_indexes_index_search_basic_get_with_http_info(index, query, opts = {}) ⇒ Array<(Array<QuerySearchHit>, Integer, Hash)>

Perform basic query search against index

Parameters:

  • index (String)
  • query (String)
  • opts (Hash) (defaults to: {}) —

    the optional parameters

Options Hash (opts):

  • :limit (Integer)

Returns:

  • (Array<(Array<QuerySearchHit>, Integer, Hash)>) —

    Array<QuerySearchHit> data, response status code and response headers



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# File 'lib/cheminee/api/default_api.rb', line 298

def v1_indexes_index_search_basic_get_with_http_info(index, query, opts = {})
  if @api_client.config.debugging
    @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_search_basic_get ...'
  end
  # verify the required parameter 'index' is set
  if @api_client.config.client_side_validation && index.nil?
    fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_search_basic_get"
  end
  # verify the required parameter 'query' is set
  if @api_client.config.client_side_validation && query.nil?
    fail ArgumentError, "Missing the required parameter 'query' when calling DefaultApi.v1_indexes_index_search_basic_get"
  end
  # resource path
  local_var_path = '/v1/indexes/{index}/search/basic'.sub('{' + 'index' + '}', CGI.escape(index.to_s))

  # query parameters
  query_params = opts[:query_params] || {}
  query_params[:'query'] = query
  query_params[:'limit'] = opts[:'limit'] if !opts[:'limit'].nil?

  # header parameters
  header_params = opts[:header_params] || {}
  # HTTP header 'Accept' (if needed)
  header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])

  # form parameters
  form_params = opts[:form_params] || {}

  # http body (model)
  post_body = opts[:debug_body]

  # return_type
  return_type = opts[:debug_return_type] || 'Array<QuerySearchHit>'

  # auth_names
  auth_names = opts[:debug_auth_names] || []

  new_options = opts.merge(
    :operation => :"DefaultApi.v1_indexes_index_search_basic_get",
    :header_params => header_params,
    :query_params => query_params,
    :form_params => form_params,
    :body => post_body,
    :auth_names => auth_names,
    :return_type => return_type
  )

  data, status_code, headers = @api_client.call_api(:GET, local_var_path, new_options)
  if @api_client.config.debugging
    @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_search_basic_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
  end
  return data, status_code, headers
end

#v1_indexes_index_search_substructure_get(index, smiles, opts = {}) ⇒ Array<StructureSearchHit>

Perform substructure search against index

Parameters:

  • index (String)
  • smiles (String)
  • opts (Hash) (defaults to: {}) —

    the optional parameters

Options Hash (opts):

  • :result_limit (Integer)
  • :tautomer_limit (Integer)
  • :extra_query (String)

Returns:



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# File 'lib/cheminee/api/default_api.rb', line 360

def v1_indexes_index_search_substructure_get(index, smiles, opts = {})
  data, _status_code, _headers = v1_indexes_index_search_substructure_get_with_http_info(index, smiles, opts)
  data
end

#v1_indexes_index_search_substructure_get_with_http_info(index, smiles, opts = {}) ⇒ Array<(Array<StructureSearchHit>, Integer, Hash)>

Perform substructure search against index

Parameters:

  • index (String)
  • smiles (String)
  • opts (Hash) (defaults to: {}) —

    the optional parameters

Options Hash (opts):

  • :result_limit (Integer)
  • :tautomer_limit (Integer)
  • :extra_query (String)

Returns:

  • (Array<(Array<StructureSearchHit>, Integer, Hash)>) —

    Array<StructureSearchHit> data, response status code and response headers



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# File 'lib/cheminee/api/default_api.rb', line 373

def v1_indexes_index_search_substructure_get_with_http_info(index, smiles, opts = {})
  if @api_client.config.debugging
    @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_search_substructure_get ...'
  end
  # verify the required parameter 'index' is set
  if @api_client.config.client_side_validation && index.nil?
    fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_search_substructure_get"
  end
  # verify the required parameter 'smiles' is set
  if @api_client.config.client_side_validation && smiles.nil?
    fail ArgumentError, "Missing the required parameter 'smiles' when calling DefaultApi.v1_indexes_index_search_substructure_get"
  end
  # resource path
  local_var_path = '/v1/indexes/{index}/search/substructure'.sub('{' + 'index' + '}', CGI.escape(index.to_s))

  # query parameters
  query_params = opts[:query_params] || {}
  query_params[:'smiles'] = smiles
  query_params[:'result_limit'] = opts[:'result_limit'] if !opts[:'result_limit'].nil?
  query_params[:'tautomer_limit'] = opts[:'tautomer_limit'] if !opts[:'tautomer_limit'].nil?
  query_params[:'extra_query'] = opts[:'extra_query'] if !opts[:'extra_query'].nil?

  # header parameters
  header_params = opts[:header_params] || {}
  # HTTP header 'Accept' (if needed)
  header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])

  # form parameters
  form_params = opts[:form_params] || {}

  # http body (model)
  post_body = opts[:debug_body]

  # return_type
  return_type = opts[:debug_return_type] || 'Array<StructureSearchHit>'

  # auth_names
  auth_names = opts[:debug_auth_names] || []

  new_options = opts.merge(
    :operation => :"DefaultApi.v1_indexes_index_search_substructure_get",
    :header_params => header_params,
    :query_params => query_params,
    :form_params => form_params,
    :body => post_body,
    :auth_names => auth_names,
    :return_type => return_type
  )

  data, status_code, headers = @api_client.call_api(:GET, local_var_path, new_options)
  if @api_client.config.debugging
    @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_search_substructure_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
  end
  return data, status_code, headers
end

#v1_schemas_get(opts = {}) ⇒ Array<Schema>

List schemas available for creating indexes

Parameters:

  • opts (Hash) (defaults to: {}) —

    the optional parameters

Returns:



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# File 'lib/cheminee/api/default_api.rb', line 432

def v1_schemas_get(opts = {})
  data, _status_code, _headers = v1_schemas_get_with_http_info(opts)
  data
end

#v1_schemas_get_with_http_info(opts = {}) ⇒ Array<(Array<Schema>, Integer, Hash)>

List schemas available for creating indexes

Parameters:

  • opts (Hash) (defaults to: {}) —

    the optional parameters

Returns:

  • (Array<(Array<Schema>, Integer, Hash)>) —

    Array<Schema> data, response status code and response headers



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# File 'lib/cheminee/api/default_api.rb', line 440

def v1_schemas_get_with_http_info(opts = {})
  if @api_client.config.debugging
    @api_client.config.logger.debug 'Calling API: DefaultApi.v1_schemas_get ...'
  end
  # resource path
  local_var_path = '/v1/schemas'

  # query parameters
  query_params = opts[:query_params] || {}

  # header parameters
  header_params = opts[:header_params] || {}
  # HTTP header 'Accept' (if needed)
  header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])

  # form parameters
  form_params = opts[:form_params] || {}

  # http body (model)
  post_body = opts[:debug_body]

  # return_type
  return_type = opts[:debug_return_type] || 'Array<Schema>'

  # auth_names
  auth_names = opts[:debug_auth_names] || []

  new_options = opts.merge(
    :operation => :"DefaultApi.v1_schemas_get",
    :header_params => header_params,
    :query_params => query_params,
    :form_params => form_params,
    :body => post_body,
    :auth_names => auth_names,
    :return_type => return_type
  )

  data, status_code, headers = @api_client.call_api(:GET, local_var_path, new_options)
  if @api_client.config.debugging
    @api_client.config.logger.debug "API called: DefaultApi#v1_schemas_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
  end
  return data, status_code, headers
end

#v1_standardize_post(smiles, opts = {}) ⇒ Array<StandardizedSmiles>

Pass a list of SMILES through fragment_parent, uncharger, and canonicalization routines

Parameters:

  • smiles (Array<Smiles>)
  • opts (Hash) (defaults to: {}) —

    the optional parameters

Returns:



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# File 'lib/cheminee/api/default_api.rb', line 488

def v1_standardize_post(smiles, opts = {})
  data, _status_code, _headers = v1_standardize_post_with_http_info(smiles, opts)
  data
end

#v1_standardize_post_with_http_info(smiles, opts = {}) ⇒ Array<(Array<StandardizedSmiles>, Integer, Hash)>

Pass a list of SMILES through fragment_parent, uncharger, and canonicalization routines

Parameters:

  • smiles (Array<Smiles>)
  • opts (Hash) (defaults to: {}) —

    the optional parameters

Returns:

  • (Array<(Array<StandardizedSmiles>, Integer, Hash)>) —

    Array<StandardizedSmiles> data, response status code and response headers



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# File 'lib/cheminee/api/default_api.rb', line 497

def v1_standardize_post_with_http_info(smiles, opts = {})
  if @api_client.config.debugging
    @api_client.config.logger.debug 'Calling API: DefaultApi.v1_standardize_post ...'
  end
  # verify the required parameter 'smiles' is set
  if @api_client.config.client_side_validation && smiles.nil?
    fail ArgumentError, "Missing the required parameter 'smiles' when calling DefaultApi.v1_standardize_post"
  end
  # resource path
  local_var_path = '/v1/standardize'

  # query parameters
  query_params = opts[:query_params] || {}

  # header parameters
  header_params = opts[:header_params] || {}
  # HTTP header 'Accept' (if needed)
  header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])
  # HTTP header 'Content-Type'
  content_type = @api_client.select_header_content_type(['application/json; charset=utf-8'])
  if !content_type.nil?
      header_params['Content-Type'] = content_type
  end

  # form parameters
  form_params = opts[:form_params] || {}

  # http body (model)
  post_body = opts[:debug_body] || @api_client.object_to_http_body(smiles)

  # return_type
  return_type = opts[:debug_return_type] || 'Array<StandardizedSmiles>'

  # auth_names
  auth_names = opts[:debug_auth_names] || []

  new_options = opts.merge(
    :operation => :"DefaultApi.v1_standardize_post",
    :header_params => header_params,
    :query_params => query_params,
    :form_params => form_params,
    :body => post_body,
    :auth_names => auth_names,
    :return_type => return_type
  )

  data, status_code, headers = @api_client.call_api(:POST, local_var_path, new_options)
  if @api_client.config.debugging
    @api_client.config.logger.debug "API called: DefaultApi#v1_standardize_post\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
  end
  return data, status_code, headers
end