Class: Bio::TwoBit::Hg19

Inherits:
ReferenceGenome show all
Defined in:
lib/bio/twobit/references/hg19.rb

Constant Summary

Constants inherited from Bio::TwoBit

VERSION

Instance Attribute Summary

Attributes inherited from Bio::TwoBit

#metadata

Instance Method Summary collapse

Methods inherited from ReferenceGenome

open

Methods inherited from Bio::TwoBit

#bases, #chroms, #clear_cache!, #close, #closed?, #hard_masked_blocks, #info, #masked?, open, #path, #sequence, #soft_masked_blocks

Constructor Details

#initialize(**kwargs) ⇒ Hg19

Returns a new instance of Hg19.



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# File 'lib/bio/twobit/references/hg19.rb', line 6

def initialize(**kwargs)
  @metadata      = Metadata.new
  @metadata.id   = "hg19"
  @metadata.name = "hg19"
  @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
  @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.2bit"
  super(**kwargs)
end