Module: Aws::Omics::Types

Defined in:
lib/aws-sdk-omics/types.rb

Defined Under Namespace

Classes: AbortMultipartReadSetUploadRequest, AbortMultipartReadSetUploadResponse, AcceptShareRequest, AcceptShareResponse, AccessDeniedException, ActivateReadSetFilter, ActivateReadSetJobItem, ActivateReadSetSourceItem, AnnotationImportItemDetail, AnnotationImportItemSource, AnnotationImportJobItem, AnnotationStoreItem, AnnotationStoreVersionItem, BatchDeleteReadSetRequest, BatchDeleteReadSetResponse, BatchListItem, BatchRunSettings, CancelAnnotationImportRequest, CancelAnnotationImportResponse, CancelRunBatchRequest, CancelRunBatchResponse, CancelRunRequest, CancelVariantImportRequest, CancelVariantImportResponse, CompleteMultipartReadSetUploadRequest, CompleteMultipartReadSetUploadResponse, CompleteReadSetUploadPartListItem, ConfigurationDetails, ConfigurationListItem, ConflictException, ContainerRegistryMap, CreateAnnotationStoreRequest, CreateAnnotationStoreResponse, CreateAnnotationStoreVersionRequest, CreateAnnotationStoreVersionResponse, CreateConfigurationRequest, CreateConfigurationResponse, CreateMultipartReadSetUploadRequest, CreateMultipartReadSetUploadResponse, CreateReferenceStoreRequest, CreateReferenceStoreResponse, CreateRunCacheRequest, CreateRunCacheResponse, CreateRunGroupRequest, CreateRunGroupResponse, CreateSequenceStoreRequest, CreateSequenceStoreResponse, CreateShareRequest, CreateShareResponse, CreateVariantStoreRequest, CreateVariantStoreResponse, CreateWorkflowRequest, CreateWorkflowResponse, CreateWorkflowVersionRequest, CreateWorkflowVersionResponse, DefaultRunSetting, DefinitionRepository, DefinitionRepositoryDetails, DeleteAnnotationStoreRequest, DeleteAnnotationStoreResponse, DeleteAnnotationStoreVersionsRequest, DeleteAnnotationStoreVersionsResponse, DeleteBatchRequest, DeleteConfigurationRequest, DeleteReferenceRequest, DeleteReferenceResponse, DeleteReferenceStoreRequest, DeleteReferenceStoreResponse, DeleteRunBatchRequest, DeleteRunBatchResponse, DeleteRunCacheRequest, DeleteRunGroupRequest, DeleteRunRequest, DeleteS3AccessPolicyRequest, DeleteS3AccessPolicyResponse, DeleteSequenceStoreRequest, DeleteSequenceStoreResponse, DeleteShareRequest, DeleteShareResponse, DeleteVariantStoreRequest, DeleteVariantStoreResponse, DeleteWorkflowRequest, DeleteWorkflowVersionRequest, ETag, ExportReadSet, ExportReadSetDetail, ExportReadSetFilter, ExportReadSetJobDetail, FileInformation, Filter, FormatOptions, GetAnnotationImportRequest, GetAnnotationImportResponse, GetAnnotationStoreRequest, GetAnnotationStoreResponse, GetAnnotationStoreVersionRequest, GetAnnotationStoreVersionResponse, GetBatchRequest, GetBatchResponse, GetConfigurationRequest, GetConfigurationResponse, GetReadSetActivationJobRequest, GetReadSetActivationJobResponse, GetReadSetExportJobRequest, GetReadSetExportJobResponse, GetReadSetImportJobRequest, GetReadSetImportJobResponse, GetReadSetMetadataRequest, GetReadSetMetadataResponse, GetReadSetRequest, GetReadSetResponse, GetReferenceImportJobRequest, GetReferenceImportJobResponse, GetReferenceMetadataRequest, GetReferenceMetadataResponse, GetReferenceRequest, GetReferenceResponse, GetReferenceStoreRequest, GetReferenceStoreResponse, GetRunCacheRequest, GetRunCacheResponse, GetRunGroupRequest, GetRunGroupResponse, GetRunRequest, GetRunResponse, GetRunTaskRequest, GetRunTaskResponse, GetS3AccessPolicyRequest, GetS3AccessPolicyResponse, GetSequenceStoreRequest, GetSequenceStoreResponse, GetShareRequest, GetShareResponse, GetVariantImportRequest, GetVariantImportResponse, GetVariantStoreRequest, GetVariantStoreResponse, GetWorkflowRequest, GetWorkflowResponse, GetWorkflowVersionRequest, GetWorkflowVersionResponse, ImageDetails, ImageMapping, ImportReadSetFilter, ImportReadSetJobItem, ImportReadSetSourceItem, ImportReferenceFilter, ImportReferenceJobItem, ImportReferenceSourceItem, InlineSetting, InternalServerException, ListAnnotationImportJobsFilter, ListAnnotationImportJobsRequest, ListAnnotationImportJobsResponse, ListAnnotationStoreVersionsFilter, ListAnnotationStoreVersionsRequest, ListAnnotationStoreVersionsResponse, ListAnnotationStoresFilter, ListAnnotationStoresRequest, ListAnnotationStoresResponse, ListBatchRequest, ListBatchResponse, ListConfigurationsRequest, ListConfigurationsResponse, ListMultipartReadSetUploadsRequest, ListMultipartReadSetUploadsResponse, ListReadSetActivationJobsRequest, ListReadSetActivationJobsResponse, ListReadSetExportJobsRequest, ListReadSetExportJobsResponse, ListReadSetImportJobsRequest, ListReadSetImportJobsResponse, ListReadSetUploadPartsRequest, ListReadSetUploadPartsResponse, ListReadSetsRequest, ListReadSetsResponse, ListReferenceImportJobsRequest, ListReferenceImportJobsResponse, ListReferenceStoresRequest, ListReferenceStoresResponse, ListReferencesRequest, ListReferencesResponse, ListRunCachesRequest, ListRunCachesResponse, ListRunGroupsRequest, ListRunGroupsResponse, ListRunTasksRequest, ListRunTasksResponse, ListRunsInBatchRequest, ListRunsInBatchResponse, ListRunsRequest, ListRunsResponse, ListSequenceStoresRequest, ListSequenceStoresResponse, ListSharesRequest, ListSharesResponse, ListTagsForResourceRequest, ListTagsForResourceResponse, ListVariantImportJobsFilter, ListVariantImportJobsRequest, ListVariantImportJobsResponse, ListVariantStoresFilter, ListVariantStoresRequest, ListVariantStoresResponse, ListWorkflowVersionsRequest, ListWorkflowVersionsResponse, ListWorkflowsRequest, ListWorkflowsResponse, MultipartReadSetUploadListItem, NotSupportedOperationException, PutS3AccessPolicyRequest, PutS3AccessPolicyResponse, RangeNotSatisfiableException, ReadOptions, ReadSetBatchError, ReadSetFiles, ReadSetFilter, ReadSetListItem, ReadSetS3Access, ReadSetUploadPartListFilter, ReadSetUploadPartListItem, ReferenceFiles, ReferenceFilter, ReferenceItem, ReferenceListItem, ReferenceStoreDetail, ReferenceStoreFilter, RegistryMapping, RequestTimeoutException, ResourceNotFoundException, RunBatchListItem, RunCacheListItem, RunConfigurations, RunConfigurationsResponse, RunGroupListItem, RunListItem, RunLogLocation, RunSummary, S3AccessConfig, SequenceInformation, SequenceStoreDetail, SequenceStoreFilter, SequenceStoreS3Access, ServiceQuotaExceededException, ShareDetails, SourceFiles, SourceReference, SseConfig, StartAnnotationImportRequest, StartAnnotationImportResponse, StartReadSetActivationJobRequest, StartReadSetActivationJobResponse, StartReadSetActivationJobSourceItem, StartReadSetExportJobRequest, StartReadSetExportJobResponse, StartReadSetImportJobRequest, StartReadSetImportJobResponse, StartReadSetImportJobSourceItem, StartReferenceImportJobRequest, StartReferenceImportJobResponse, StartReferenceImportJobSourceItem, StartRunBatchRequest, StartRunBatchResponse, StartRunRequest, StartRunResponse, StartVariantImportRequest, StartVariantImportResponse, StoreOptions, SubmissionSummary, TagResourceRequest, TagResourceResponse, TaskListItem, ThrottlingException, TsvOptions, TsvStoreOptions, TsvVersionOptions, UntagResourceRequest, UntagResourceResponse, UpdateAnnotationStoreRequest, UpdateAnnotationStoreResponse, UpdateAnnotationStoreVersionRequest, UpdateAnnotationStoreVersionResponse, UpdateRunCacheRequest, UpdateRunGroupRequest, UpdateSequenceStoreRequest, UpdateSequenceStoreResponse, UpdateVariantStoreRequest, UpdateVariantStoreResponse, UpdateWorkflowRequest, UpdateWorkflowVersionRequest, UploadReadSetPartRequest, UploadReadSetPartResponse, ValidationException, VariantImportItemDetail, VariantImportItemSource, VariantImportJobItem, VariantStoreItem, VcfOptions, VersionDeleteError, VersionOptions, VpcConfig, VpcConfigResponse, WorkflowListItem, WorkflowParameter, WorkflowVersionListItem

Instance Attribute Summary collapse

Instance Attribute Details

#inline_settings ⇒ Array<Types::InlineSetting>

A list of per-run configurations provided inline in the request. Each entry must include a unique ‘runSettingId`. Supports up to 100 entries. For batches with more than 100 runs, use `s3UriSettings`.

Returns:



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# File 'lib/aws-sdk-omics/types.rb', line 473

class BatchRunSettings < Struct.new(
  :inline_settings,
  :s3_uri_settings,
  :unknown)
  SENSITIVE = []
  include Aws::Structure
  include Aws::Structure::Union

  class InlineSettings < BatchRunSettings; end
  class S3UriSettings < BatchRunSettings; end
  class Unknown < BatchRunSettings; end
end

#reference_arn ⇒ String

The reference’s ARN.

Returns:

  • (String) 


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# File 'lib/aws-sdk-omics/types.rb', line 7014

class ReferenceItem < Struct.new(
  :reference_arn,
  :unknown)
  SENSITIVE = []
  include Aws::Structure
  include Aws::Structure::Union

  class ReferenceArn < ReferenceItem; end
  class Unknown < ReferenceItem; end
end

#s3_uri_settings ⇒ String

An Amazon S3 URI pointing to a JSON file containing per-run configurations. The file must be a JSON array in the same format as ‘inlineSettings`. Supports up to 100,000 run configurations. The maximum file size is 6 GB.

The IAM service role in ‘roleArn` must have read access to this S3 object. HealthOmics validates access to the file during the synchronous API call and records the file’s ETag. If the file is modified after submission, the batch fails.

Returns:

  • (String) 


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# File 'lib/aws-sdk-omics/types.rb', line 473

class BatchRunSettings < Struct.new(
  :inline_settings,
  :s3_uri_settings,
  :unknown)
  SENSITIVE = []
  include Aws::Structure
  include Aws::Structure::Union

  class InlineSettings < BatchRunSettings; end
  class S3UriSettings < BatchRunSettings; end
  class Unknown < BatchRunSettings; end
end

#tsv_options ⇒ Types::TsvOptions

Options for a TSV file.

Returns:



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# File 'lib/aws-sdk-omics/types.rb', line 2736

class FormatOptions < Struct.new(
  :tsv_options,
  :vcf_options,
  :unknown)
  SENSITIVE = []
  include Aws::Structure
  include Aws::Structure::Union

  class TsvOptions < FormatOptions; end
  class VcfOptions < FormatOptions; end
  class Unknown < FormatOptions; end
end

#tsv_store_options ⇒ Types::TsvStoreOptions

File settings for a TSV store.

Returns:



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# File 'lib/aws-sdk-omics/types.rb', line 8592

class StoreOptions < Struct.new(
  :tsv_store_options,
  :unknown)
  SENSITIVE = []
  include Aws::Structure
  include Aws::Structure::Union

  class TsvStoreOptions < StoreOptions; end
  class Unknown < StoreOptions; end
end

#tsv_version_options ⇒ Types::TsvVersionOptions

File settings for a version of a TSV store.

Returns:



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# File 'lib/aws-sdk-omics/types.rb', line 9583

class VersionOptions < Struct.new(
  :tsv_version_options,
  :unknown)
  SENSITIVE = []
  include Aws::Structure
  include Aws::Structure::Union

  class TsvVersionOptions < VersionOptions; end
  class Unknown < VersionOptions; end
end

#vcf_options ⇒ Types::VcfOptions

Options for a VCF file.

Returns:



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# File 'lib/aws-sdk-omics/types.rb', line 2736

class FormatOptions < Struct.new(
  :tsv_options,
  :vcf_options,
  :unknown)
  SENSITIVE = []
  include Aws::Structure
  include Aws::Structure::Union

  class TsvOptions < FormatOptions; end
  class VcfOptions < FormatOptions; end
  class Unknown < FormatOptions; end
end